miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30179 5' -53.8 NC_006273.1 + 127469 0.66 0.978612
Target:  5'- cUGCggu-GGUAGGGCGCCaucagccaGGUGUUc -3'
miRNA:   3'- -ACGaacuUCAUCCCGUGGc-------CCACAAa -5'
30179 5' -53.8 NC_006273.1 + 82577 0.67 0.967864
Target:  5'- -cCUUGAGGUAGGGCGguagCGGGUc--- -3'
miRNA:   3'- acGAACUUCAUCCCGUg---GCCCAcaaa -5'
30179 5' -53.8 NC_006273.1 + 40797 0.68 0.940768
Target:  5'- cGCUcgGggGUu-GGCGgCGGGUGUUUc -3'
miRNA:   3'- aCGAa-CuuCAucCCGUgGCCCACAAA- -5'
30179 5' -53.8 NC_006273.1 + 859 0.68 0.940768
Target:  5'- cGCUcgGggGUu-GGCGgCGGGUGUUUc -3'
miRNA:   3'- aCGAa-CuuCAucCCGUgGCCCACAAA- -5'
30179 5' -53.8 NC_006273.1 + 150499 0.68 0.935964
Target:  5'- aGCUUGggGggugAGGGCAaauUgGGGUaGUUg -3'
miRNA:   3'- aCGAACuuCa---UCCCGU---GgCCCA-CAAa -5'
30179 5' -53.8 NC_006273.1 + 119204 0.69 0.920104
Target:  5'- cGCUUGAuuuuGUccGGUuuACCGGGUGUg- -3'
miRNA:   3'- aCGAACUu---CAucCCG--UGGCCCACAaa -5'
30179 5' -53.8 NC_006273.1 + 38461 0.69 0.902076
Target:  5'- aGCaaGAGGUAGcGGCugCGGGUc--- -3'
miRNA:   3'- aCGaaCUUCAUC-CCGugGCCCAcaaa -5'
30179 5' -53.8 NC_006273.1 + 194935 0.72 0.782845
Target:  5'- cGCggcGggGUGGGuGUguGCCGGGUGUg- -3'
miRNA:   3'- aCGaa-CuuCAUCC-CG--UGGCCCACAaa -5'
30179 5' -53.8 NC_006273.1 + 42 0.72 0.782845
Target:  5'- cGCggcGggGUGGGuGUguGCCGGGUGUg- -3'
miRNA:   3'- aCGaa-CuuCAUCC-CG--UGGCCCACAaa -5'
30179 5' -53.8 NC_006273.1 + 234873 0.72 0.782845
Target:  5'- cGCggcGggGUGGGuGUguGCCGGGUGUg- -3'
miRNA:   3'- aCGaa-CuuCAUCC-CG--UGGCCCACAaa -5'
30179 5' -53.8 NC_006273.1 + 168024 1.05 0.010732
Target:  5'- cUGCUUGAAGUAGGGCACCGGGUGUUUc -3'
miRNA:   3'- -ACGAACUUCAUCCCGUGGCCCACAAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.