miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 123884 0.66 0.972949
Target:  5'- cGCGU-GUC-CCCUCUUCuCCCUUcgCa -3'
miRNA:   3'- -UGCAgUAGuGGGAGGAGuGGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 24812 0.66 0.970191
Target:  5'- -gGUCAUCACCUUgCUCugCgcggaaguagucUUCAUCu -3'
miRNA:   3'- ugCAGUAGUGGGAgGAGugG------------GAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 101378 0.66 0.970191
Target:  5'- uGCG-CAUCGCCUgCCUCAUCCgacagagCGUg -3'
miRNA:   3'- -UGCaGUAGUGGGaGGAGUGGGa------GUAg -5'
30180 3' -55.3 NC_006273.1 + 222031 0.66 0.970191
Target:  5'- gUGUCGUCuuCCUCUUgAUCCUCuUCu -3'
miRNA:   3'- uGCAGUAGugGGAGGAgUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 46240 0.66 0.970191
Target:  5'- -aGUCGccgCgACCC-CCUCACCUUCAgUCa -3'
miRNA:   3'- ugCAGUa--G-UGGGaGGAGUGGGAGU-AG- -5'
30180 3' -55.3 NC_006273.1 + 122950 0.66 0.968443
Target:  5'- aGCGUCAauucguaagggacgCGCaCCUCCaguCCCUCGUCc -3'
miRNA:   3'- -UGCAGUa-------------GUG-GGAGGaguGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 65729 0.66 0.967238
Target:  5'- gGCGcCGUCcuucgacgaaGCUUUCCUCACCgaUCGUCu -3'
miRNA:   3'- -UGCaGUAG----------UGGGAGGAGUGGg-AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 191681 0.66 0.964083
Target:  5'- aACGUCAUCGUCUUCaCUCugCUgcucggCGUCa -3'
miRNA:   3'- -UGCAGUAGUGGGAG-GAGugGGa-----GUAG- -5'
30180 3' -55.3 NC_006273.1 + 152930 0.66 0.963756
Target:  5'- gGCGUUGcCACCUUCCUCAaaaacCCCUucggagcguucacCAUCa -3'
miRNA:   3'- -UGCAGUaGUGGGAGGAGU-----GGGA-------------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 185073 0.66 0.960722
Target:  5'- cGCGUUGcUCAgCCUCUUCugcauccUCCUCAUCg -3'
miRNA:   3'- -UGCAGU-AGUgGGAGGAGu------GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 219683 0.66 0.960722
Target:  5'- gGCGguaAUCACCCgcUCUgCGCCCUCGc- -3'
miRNA:   3'- -UGCag-UAGUGGG--AGGaGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 213131 0.66 0.95715
Target:  5'- gGCGgagccgCGUCGCUCgCCggCGCCCgUCAUCu -3'
miRNA:   3'- -UGCa-----GUAGUGGGaGGa-GUGGG-AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 26314 0.66 0.95715
Target:  5'- uAC-UCGUCuCCCUaucgcugCUCAUCCUCAUCu -3'
miRNA:   3'- -UGcAGUAGuGGGAg------GAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 114947 0.66 0.95715
Target:  5'- uACG-CGU-ACCCUUCUCACCaugCGUCu -3'
miRNA:   3'- -UGCaGUAgUGGGAGGAGUGGga-GUAG- -5'
30180 3' -55.3 NC_006273.1 + 97053 0.67 0.953361
Target:  5'- gGCGUCAUCGCUCUCacagaaaaaagUCGCggguuCCUCGUUg -3'
miRNA:   3'- -UGCAGUAGUGGGAGg----------AGUG-----GGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 202150 0.67 0.953361
Target:  5'- cCGUCGUCGCCgCcCCgggGCCCUCGg- -3'
miRNA:   3'- uGCAGUAGUGG-GaGGag-UGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 129626 0.67 0.953361
Target:  5'- cACGUUcgCGCCUgcaaCCUCACCCa---- -3'
miRNA:   3'- -UGCAGuaGUGGGa---GGAGUGGGaguag -5'
30180 3' -55.3 NC_006273.1 + 41987 0.67 0.953361
Target:  5'- uCGUCAUCAUCaucgucgUCgUCGUCCUCAUCg -3'
miRNA:   3'- uGCAGUAGUGGg------AGgAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 206258 0.67 0.952971
Target:  5'- cCGUCAaggccgccucuucUgGCCCUCCgcCACCCUUcgCu -3'
miRNA:   3'- uGCAGU-------------AgUGGGAGGa-GUGGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 27130 0.67 0.935986
Target:  5'- gGCG-CAUCACCCgCCUCauggACCCgccgcugcCGUCg -3'
miRNA:   3'- -UGCaGUAGUGGGaGGAG----UGGGa-------GUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.