miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 170161 1.1 0.004654
Target:  5'- uACGUCAUCACCCUCCUCACCCUCAUCa -3'
miRNA:   3'- -UGCAGUAGUGGGAGGAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 189457 0.86 0.156697
Target:  5'- uCGUCGUCGUCCUCCUCuCCCUCGUCg -3'
miRNA:   3'- uGCAGUAGUGGGAGGAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 121028 0.81 0.306237
Target:  5'- uCGUCGUCGCCCUgggcggCACCCUCGUCg -3'
miRNA:   3'- uGCAGUAGUGGGAgga---GUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 89697 0.78 0.431944
Target:  5'- cCGUCGUCAUCgUCCUCcCCUUCGUCc -3'
miRNA:   3'- uGCAGUAGUGGgAGGAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 74909 0.76 0.533868
Target:  5'- cACGUCGUUuUCCUCCUCuCCgUCGUCa -3'
miRNA:   3'- -UGCAGUAGuGGGAGGAGuGGgAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 99774 0.75 0.583033
Target:  5'- aGCGUCGUCACUgUCUUCGUCCUCuUCa -3'
miRNA:   3'- -UGCAGUAGUGGgAGGAGUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 218091 0.74 0.612985
Target:  5'- uCGUCAUCAUCCUCUcCcuGCuCCUCAUCg -3'
miRNA:   3'- uGCAGUAGUGGGAGGaG--UG-GGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 130040 0.74 0.643061
Target:  5'- -gGUCAcuUCAUCCUCCUCgucGCCCUCuUCc -3'
miRNA:   3'- ugCAGU--AGUGGGAGGAG---UGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 41145 0.73 0.673061
Target:  5'- uCGUCGUCuuCCUCCUCGCUgUCuUCg -3'
miRNA:   3'- uGCAGUAGugGGAGGAGUGGgAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 30264 0.73 0.673061
Target:  5'- uGCGUCAUCACCCgaucCCUCcUCCUgAUa -3'
miRNA:   3'- -UGCAGUAGUGGGa---GGAGuGGGAgUAg -5'
30180 3' -55.3 NC_006273.1 + 72265 0.73 0.683007
Target:  5'- cGCcUCAgccggaGCCCUCCUCAUCCUCcUCa -3'
miRNA:   3'- -UGcAGUag----UGGGAGGAGUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 105829 0.72 0.722306
Target:  5'- uGCGUCGgagcucuuuUCAUCUUCUUCugUCUCGUCg -3'
miRNA:   3'- -UGCAGU---------AGUGGGAGGAGugGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 226310 0.72 0.751029
Target:  5'- gACGUCGUCGUCCUCgUCcUCUUCGUCg -3'
miRNA:   3'- -UGCAGUAGUGGGAGgAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 198155 0.71 0.769691
Target:  5'- cCGUCG-CGCCUUCCUCugCCUgggcacgcgCGUCg -3'
miRNA:   3'- uGCAGUaGUGGGAGGAGugGGA---------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 94621 0.71 0.769691
Target:  5'- gGCGUCAUCgACCCggCCUgcugaCGCgCUCGUCu -3'
miRNA:   3'- -UGCAGUAG-UGGGa-GGA-----GUGgGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 21435 0.71 0.808994
Target:  5'- cCGUCcucGUCGCCUUCCagcuuaccgccaccgUCGCCCUCAg- -3'
miRNA:   3'- uGCAG---UAGUGGGAGG---------------AGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 102657 0.7 0.822583
Target:  5'- uCGUCGUCuCCCcggcgcUCCUCACCaCUCGcaUCa -3'
miRNA:   3'- uGCAGUAGuGGG------AGGAGUGG-GAGU--AG- -5'
30180 3' -55.3 NC_006273.1 + 128751 0.7 0.830862
Target:  5'- aGCGUCGUCGCCauuaCCgUCGCCgCUCAa- -3'
miRNA:   3'- -UGCAGUAGUGGga--GG-AGUGG-GAGUag -5'
30180 3' -55.3 NC_006273.1 + 52355 0.7 0.846892
Target:  5'- uGCGUCuGUCGCCa--CUCGgCCUCGUCc -3'
miRNA:   3'- -UGCAG-UAGUGGgagGAGUgGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 131216 0.7 0.853098
Target:  5'- uACGUCAUCucaaccaggucuUCCUcugccccaCCUCGCCCUCGUg -3'
miRNA:   3'- -UGCAGUAGu-----------GGGA--------GGAGUGGGAGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.