miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 89855 0.67 0.935986
Target:  5'- cCGUCGUCACCUuugccgUCCaaACCCcCGUCc -3'
miRNA:   3'- uGCAGUAGUGGG------AGGagUGGGaGUAG- -5'
30180 3' -55.3 NC_006273.1 + 27130 0.67 0.935986
Target:  5'- gGCG-CAUCACCCgCCUCauggACCCgccgcugcCGUCg -3'
miRNA:   3'- -UGCaGUAGUGGGaGGAG----UGGGa-------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 163755 0.67 0.935986
Target:  5'- uCGUCGUCGUCUUCCUC-CUCUCGg- -3'
miRNA:   3'- uGCAGUAGUGGGAGGAGuGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 124881 0.67 0.931075
Target:  5'- aGCG-CGUCGCCCUUCUC-CCaa-GUCa -3'
miRNA:   3'- -UGCaGUAGUGGGAGGAGuGGgagUAG- -5'
30180 3' -55.3 NC_006273.1 + 99411 0.67 0.931075
Target:  5'- aGCGUC-UCGgCCUCCUCGuuacucagcaccUCCUgGUCa -3'
miRNA:   3'- -UGCAGuAGUgGGAGGAGU------------GGGAgUAG- -5'
30180 3' -55.3 NC_006273.1 + 115063 0.68 0.925935
Target:  5'- aAUGUCucaggCAUCgUCCUCgcccggugagggACCCUCGUCg -3'
miRNA:   3'- -UGCAGua---GUGGgAGGAG------------UGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 223182 0.68 0.920565
Target:  5'- uCGUCAUCGUCCgagUCCUCGUCCUCAg- -3'
miRNA:   3'- uGCAGUAGUGGG---AGGAGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 135249 0.68 0.903085
Target:  5'- cUGUCGUCccuGCCCUUCUCcuguuCCCUCcgCc -3'
miRNA:   3'- uGCAGUAG---UGGGAGGAGu----GGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 125335 0.69 0.896168
Target:  5'- -gGUCGUCGCcguCCUCCUCACCggacggcCUCAc- -3'
miRNA:   3'- ugCAGUAGUG---GGAGGAGUGG-------GAGUag -5'
30180 3' -55.3 NC_006273.1 + 76086 0.69 0.890309
Target:  5'- cUGUCGUCuCCCUUCUCGCUCUgGc- -3'
miRNA:   3'- uGCAGUAGuGGGAGGAGUGGGAgUag -5'
30180 3' -55.3 NC_006273.1 + 172317 0.69 0.883592
Target:  5'- ------gCACCCUCCUCcuguUCCUCAUCa -3'
miRNA:   3'- ugcaguaGUGGGAGGAGu---GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 43326 0.69 0.876661
Target:  5'- aGCGUCGUCGCCCcggaCUgCGCCCgcggucugcuauUCGUCc -3'
miRNA:   3'- -UGCAGUAGUGGGag--GA-GUGGG------------AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 161571 0.69 0.86952
Target:  5'- cCG-CAUCuccCCCUCCUCcuccUCCUCGUCa -3'
miRNA:   3'- uGCaGUAGu--GGGAGGAGu---GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 74800 0.69 0.862175
Target:  5'- uCGUCGUCACCa-CCUCccCCCUCGa- -3'
miRNA:   3'- uGCAGUAGUGGgaGGAGu-GGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 193390 0.69 0.861429
Target:  5'- aACGUCGUCcucCCCUUCUucaccgccccaccCACCCUCGg- -3'
miRNA:   3'- -UGCAGUAGu--GGGAGGA-------------GUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 131216 0.7 0.853098
Target:  5'- uACGUCAUCucaaccaggucuUCCUcugccccaCCUCGCCCUCGUg -3'
miRNA:   3'- -UGCAGUAGu-----------GGGA--------GGAGUGGGAGUAg -5'
30180 3' -55.3 NC_006273.1 + 52355 0.7 0.846892
Target:  5'- uGCGUCuGUCGCCa--CUCGgCCUCGUCc -3'
miRNA:   3'- -UGCAG-UAGUGGgagGAGUgGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 128751 0.7 0.830862
Target:  5'- aGCGUCGUCGCCauuaCCgUCGCCgCUCAa- -3'
miRNA:   3'- -UGCAGUAGUGGga--GG-AGUGG-GAGUag -5'
30180 3' -55.3 NC_006273.1 + 102657 0.7 0.822583
Target:  5'- uCGUCGUCuCCCcggcgcUCCUCACCaCUCGcaUCa -3'
miRNA:   3'- uGCAGUAGuGGG------AGGAGUGG-GAGU--AG- -5'
30180 3' -55.3 NC_006273.1 + 21435 0.71 0.808994
Target:  5'- cCGUCcucGUCGCCUUCCagcuuaccgccaccgUCGCCCUCAg- -3'
miRNA:   3'- uGCAG---UAGUGGGAGG---------------AGUGGGAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.