miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 21435 0.71 0.808994
Target:  5'- cCGUCcucGUCGCCUUCCagcuuaccgccaccgUCGCCCUCAg- -3'
miRNA:   3'- uGCAG---UAGUGGGAGG---------------AGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 24812 0.66 0.970191
Target:  5'- -gGUCAUCACCUUgCUCugCgcggaaguagucUUCAUCu -3'
miRNA:   3'- ugCAGUAGUGGGAgGAGugG------------GAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 26314 0.66 0.95715
Target:  5'- uAC-UCGUCuCCCUaucgcugCUCAUCCUCAUCu -3'
miRNA:   3'- -UGcAGUAGuGGGAg------GAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 27130 0.67 0.935986
Target:  5'- gGCG-CAUCACCCgCCUCauggACCCgccgcugcCGUCg -3'
miRNA:   3'- -UGCaGUAGUGGGaGGAG----UGGGa-------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 30264 0.73 0.673061
Target:  5'- uGCGUCAUCACCCgaucCCUCcUCCUgAUa -3'
miRNA:   3'- -UGCAGUAGUGGGa---GGAGuGGGAgUAg -5'
30180 3' -55.3 NC_006273.1 + 41145 0.73 0.673061
Target:  5'- uCGUCGUCuuCCUCCUCGCUgUCuUCg -3'
miRNA:   3'- uGCAGUAGugGGAGGAGUGGgAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 41987 0.67 0.953361
Target:  5'- uCGUCAUCAUCaucgucgUCgUCGUCCUCAUCg -3'
miRNA:   3'- uGCAGUAGUGGg------AGgAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 43326 0.69 0.876661
Target:  5'- aGCGUCGUCGCCCcggaCUgCGCCCgcggucugcuauUCGUCc -3'
miRNA:   3'- -UGCAGUAGUGGGag--GA-GUGGG------------AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 46240 0.66 0.970191
Target:  5'- -aGUCGccgCgACCC-CCUCACCUUCAgUCa -3'
miRNA:   3'- ugCAGUa--G-UGGGaGGAGUGGGAGU-AG- -5'
30180 3' -55.3 NC_006273.1 + 52355 0.7 0.846892
Target:  5'- uGCGUCuGUCGCCa--CUCGgCCUCGUCc -3'
miRNA:   3'- -UGCAG-UAGUGGgagGAGUgGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 65729 0.66 0.967238
Target:  5'- gGCGcCGUCcuucgacgaaGCUUUCCUCACCgaUCGUCu -3'
miRNA:   3'- -UGCaGUAG----------UGGGAGGAGUGGg-AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 72265 0.73 0.683007
Target:  5'- cGCcUCAgccggaGCCCUCCUCAUCCUCcUCa -3'
miRNA:   3'- -UGcAGUag----UGGGAGGAGUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 74800 0.69 0.862175
Target:  5'- uCGUCGUCACCa-CCUCccCCCUCGa- -3'
miRNA:   3'- uGCAGUAGUGGgaGGAGu-GGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 74909 0.76 0.533868
Target:  5'- cACGUCGUUuUCCUCCUCuCCgUCGUCa -3'
miRNA:   3'- -UGCAGUAGuGGGAGGAGuGGgAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 76086 0.69 0.890309
Target:  5'- cUGUCGUCuCCCUUCUCGCUCUgGc- -3'
miRNA:   3'- uGCAGUAGuGGGAGGAGUGGGAgUag -5'
30180 3' -55.3 NC_006273.1 + 89697 0.78 0.431944
Target:  5'- cCGUCGUCAUCgUCCUCcCCUUCGUCc -3'
miRNA:   3'- uGCAGUAGUGGgAGGAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 89855 0.67 0.935986
Target:  5'- cCGUCGUCACCUuugccgUCCaaACCCcCGUCc -3'
miRNA:   3'- uGCAGUAGUGGG------AGGagUGGGaGUAG- -5'
30180 3' -55.3 NC_006273.1 + 94621 0.71 0.769691
Target:  5'- gGCGUCAUCgACCCggCCUgcugaCGCgCUCGUCu -3'
miRNA:   3'- -UGCAGUAG-UGGGa-GGA-----GUGgGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 97053 0.67 0.953361
Target:  5'- gGCGUCAUCGCUCUCacagaaaaaagUCGCggguuCCUCGUUg -3'
miRNA:   3'- -UGCAGUAGUGGGAGg----------AGUG-----GGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 99411 0.67 0.931075
Target:  5'- aGCGUC-UCGgCCUCCUCGuuacucagcaccUCCUgGUCa -3'
miRNA:   3'- -UGCAGuAGUgGGAGGAGU------------GGGAgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.