Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30180 | 3' | -55.3 | NC_006273.1 | + | 99774 | 0.75 | 0.583033 |
Target: 5'- aGCGUCGUCACUgUCUUCGUCCUCuUCa -3' miRNA: 3'- -UGCAGUAGUGGgAGGAGUGGGAGuAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 101378 | 0.66 | 0.970191 |
Target: 5'- uGCG-CAUCGCCUgCCUCAUCCgacagagCGUg -3' miRNA: 3'- -UGCaGUAGUGGGaGGAGUGGGa------GUAg -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 102657 | 0.7 | 0.822583 |
Target: 5'- uCGUCGUCuCCCcggcgcUCCUCACCaCUCGcaUCa -3' miRNA: 3'- uGCAGUAGuGGG------AGGAGUGG-GAGU--AG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 105829 | 0.72 | 0.722306 |
Target: 5'- uGCGUCGgagcucuuuUCAUCUUCUUCugUCUCGUCg -3' miRNA: 3'- -UGCAGU---------AGUGGGAGGAGugGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 114947 | 0.66 | 0.95715 |
Target: 5'- uACG-CGU-ACCCUUCUCACCaugCGUCu -3' miRNA: 3'- -UGCaGUAgUGGGAGGAGUGGga-GUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 115063 | 0.68 | 0.925935 |
Target: 5'- aAUGUCucaggCAUCgUCCUCgcccggugagggACCCUCGUCg -3' miRNA: 3'- -UGCAGua---GUGGgAGGAG------------UGGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 121028 | 0.81 | 0.306237 |
Target: 5'- uCGUCGUCGCCCUgggcggCACCCUCGUCg -3' miRNA: 3'- uGCAGUAGUGGGAgga---GUGGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 122950 | 0.66 | 0.968443 |
Target: 5'- aGCGUCAauucguaagggacgCGCaCCUCCaguCCCUCGUCc -3' miRNA: 3'- -UGCAGUa-------------GUG-GGAGGaguGGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 123884 | 0.66 | 0.972949 |
Target: 5'- cGCGU-GUC-CCCUCUUCuCCCUUcgCa -3' miRNA: 3'- -UGCAgUAGuGGGAGGAGuGGGAGuaG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 124881 | 0.67 | 0.931075 |
Target: 5'- aGCG-CGUCGCCCUUCUC-CCaa-GUCa -3' miRNA: 3'- -UGCaGUAGUGGGAGGAGuGGgagUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 125335 | 0.69 | 0.896168 |
Target: 5'- -gGUCGUCGCcguCCUCCUCACCggacggcCUCAc- -3' miRNA: 3'- ugCAGUAGUG---GGAGGAGUGG-------GAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 128751 | 0.7 | 0.830862 |
Target: 5'- aGCGUCGUCGCCauuaCCgUCGCCgCUCAa- -3' miRNA: 3'- -UGCAGUAGUGGga--GG-AGUGG-GAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 129626 | 0.67 | 0.953361 |
Target: 5'- cACGUUcgCGCCUgcaaCCUCACCCa---- -3' miRNA: 3'- -UGCAGuaGUGGGa---GGAGUGGGaguag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 130040 | 0.74 | 0.643061 |
Target: 5'- -gGUCAcuUCAUCCUCCUCgucGCCCUCuUCc -3' miRNA: 3'- ugCAGU--AGUGGGAGGAG---UGGGAGuAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 131216 | 0.7 | 0.853098 |
Target: 5'- uACGUCAUCucaaccaggucuUCCUcugccccaCCUCGCCCUCGUg -3' miRNA: 3'- -UGCAGUAGu-----------GGGA--------GGAGUGGGAGUAg -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 135249 | 0.68 | 0.903085 |
Target: 5'- cUGUCGUCccuGCCCUUCUCcuguuCCCUCcgCc -3' miRNA: 3'- uGCAGUAG---UGGGAGGAGu----GGGAGuaG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 152930 | 0.66 | 0.963756 |
Target: 5'- gGCGUUGcCACCUUCCUCAaaaacCCCUucggagcguucacCAUCa -3' miRNA: 3'- -UGCAGUaGUGGGAGGAGU-----GGGA-------------GUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 161571 | 0.69 | 0.86952 |
Target: 5'- cCG-CAUCuccCCCUCCUCcuccUCCUCGUCa -3' miRNA: 3'- uGCaGUAGu--GGGAGGAGu---GGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 163755 | 0.67 | 0.935986 |
Target: 5'- uCGUCGUCGUCUUCCUC-CUCUCGg- -3' miRNA: 3'- uGCAGUAGUGGGAGGAGuGGGAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 165500 | 0.67 | 0.935986 |
Target: 5'- uAC-UUGUCACCCUcaaacaCCUCACCCaacaagCAUCg -3' miRNA: 3'- -UGcAGUAGUGGGA------GGAGUGGGa-----GUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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