miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 226310 0.72 0.751029
Target:  5'- gACGUCGUCGUCCUCgUCcUCUUCGUCg -3'
miRNA:   3'- -UGCAGUAGUGGGAGgAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 223182 0.68 0.920565
Target:  5'- uCGUCAUCGUCCgagUCCUCGUCCUCAg- -3'
miRNA:   3'- uGCAGUAGUGGG---AGGAGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 222031 0.66 0.970191
Target:  5'- gUGUCGUCuuCCUCUUgAUCCUCuUCu -3'
miRNA:   3'- uGCAGUAGugGGAGGAgUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 219683 0.66 0.960722
Target:  5'- gGCGguaAUCACCCgcUCUgCGCCCUCGc- -3'
miRNA:   3'- -UGCag-UAGUGGG--AGGaGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 218091 0.74 0.612985
Target:  5'- uCGUCAUCAUCCUCUcCcuGCuCCUCAUCg -3'
miRNA:   3'- uGCAGUAGUGGGAGGaG--UG-GGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 213131 0.66 0.95715
Target:  5'- gGCGgagccgCGUCGCUCgCCggCGCCCgUCAUCu -3'
miRNA:   3'- -UGCa-----GUAGUGGGaGGa-GUGGG-AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 206258 0.67 0.952971
Target:  5'- cCGUCAaggccgccucuucUgGCCCUCCgcCACCCUUcgCu -3'
miRNA:   3'- uGCAGU-------------AgUGGGAGGa-GUGGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 202150 0.67 0.953361
Target:  5'- cCGUCGUCGCCgCcCCgggGCCCUCGg- -3'
miRNA:   3'- uGCAGUAGUGG-GaGGag-UGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 198155 0.71 0.769691
Target:  5'- cCGUCG-CGCCUUCCUCugCCUgggcacgcgCGUCg -3'
miRNA:   3'- uGCAGUaGUGGGAGGAGugGGA---------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 193390 0.69 0.861429
Target:  5'- aACGUCGUCcucCCCUUCUucaccgccccaccCACCCUCGg- -3'
miRNA:   3'- -UGCAGUAGu--GGGAGGA-------------GUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 191681 0.66 0.964083
Target:  5'- aACGUCAUCGUCUUCaCUCugCUgcucggCGUCa -3'
miRNA:   3'- -UGCAGUAGUGGGAG-GAGugGGa-----GUAG- -5'
30180 3' -55.3 NC_006273.1 + 189457 0.86 0.156697
Target:  5'- uCGUCGUCGUCCUCCUCuCCCUCGUCg -3'
miRNA:   3'- uGCAGUAGUGGGAGGAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 185073 0.66 0.960722
Target:  5'- cGCGUUGcUCAgCCUCUUCugcauccUCCUCAUCg -3'
miRNA:   3'- -UGCAGU-AGUgGGAGGAGu------GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 172317 0.69 0.883592
Target:  5'- ------gCACCCUCCUCcuguUCCUCAUCa -3'
miRNA:   3'- ugcaguaGUGGGAGGAGu---GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 170161 1.1 0.004654
Target:  5'- uACGUCAUCACCCUCCUCACCCUCAUCa -3'
miRNA:   3'- -UGCAGUAGUGGGAGGAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 165500 0.67 0.935986
Target:  5'- uAC-UUGUCACCCUcaaacaCCUCACCCaacaagCAUCg -3'
miRNA:   3'- -UGcAGUAGUGGGA------GGAGUGGGa-----GUAG- -5'
30180 3' -55.3 NC_006273.1 + 163755 0.67 0.935986
Target:  5'- uCGUCGUCGUCUUCCUC-CUCUCGg- -3'
miRNA:   3'- uGCAGUAGUGGGAGGAGuGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 161571 0.69 0.86952
Target:  5'- cCG-CAUCuccCCCUCCUCcuccUCCUCGUCa -3'
miRNA:   3'- uGCaGUAGu--GGGAGGAGu---GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 152930 0.66 0.963756
Target:  5'- gGCGUUGcCACCUUCCUCAaaaacCCCUucggagcguucacCAUCa -3'
miRNA:   3'- -UGCAGUaGUGGGAGGAGU-----GGGA-------------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 135249 0.68 0.903085
Target:  5'- cUGUCGUCccuGCCCUUCUCcuguuCCCUCcgCc -3'
miRNA:   3'- uGCAGUAG---UGGGAGGAGu----GGGAGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.