miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 41987 0.67 0.953361
Target:  5'- uCGUCAUCAUCaucgucgUCgUCGUCCUCAUCg -3'
miRNA:   3'- uGCAGUAGUGGg------AGgAGUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 125335 0.69 0.896168
Target:  5'- -gGUCGUCGCcguCCUCCUCACCggacggcCUCAc- -3'
miRNA:   3'- ugCAGUAGUG---GGAGGAGUGG-------GAGUag -5'
30180 3' -55.3 NC_006273.1 + 135249 0.68 0.903085
Target:  5'- cUGUCGUCccuGCCCUUCUCcuguuCCCUCcgCc -3'
miRNA:   3'- uGCAGUAG---UGGGAGGAGu----GGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 223182 0.68 0.920565
Target:  5'- uCGUCAUCGUCCgagUCCUCGUCCUCAg- -3'
miRNA:   3'- uGCAGUAGUGGG---AGGAGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 124881 0.67 0.931075
Target:  5'- aGCG-CGUCGCCCUUCUC-CCaa-GUCa -3'
miRNA:   3'- -UGCaGUAGUGGGAGGAGuGGgagUAG- -5'
30180 3' -55.3 NC_006273.1 + 165500 0.67 0.935986
Target:  5'- uAC-UUGUCACCCUcaaacaCCUCACCCaacaagCAUCg -3'
miRNA:   3'- -UGcAGUAGUGGGA------GGAGUGGGa-----GUAG- -5'
30180 3' -55.3 NC_006273.1 + 163755 0.67 0.935986
Target:  5'- uCGUCGUCGUCUUCCUC-CUCUCGg- -3'
miRNA:   3'- uGCAGUAGUGGGAGGAGuGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 89855 0.67 0.935986
Target:  5'- cCGUCGUCACCUuugccgUCCaaACCCcCGUCc -3'
miRNA:   3'- uGCAGUAGUGGG------AGGagUGGGaGUAG- -5'
30180 3' -55.3 NC_006273.1 + 129626 0.67 0.953361
Target:  5'- cACGUUcgCGCCUgcaaCCUCACCCa---- -3'
miRNA:   3'- -UGCAGuaGUGGGa---GGAGUGGGaguag -5'
30180 3' -55.3 NC_006273.1 + 172317 0.69 0.883592
Target:  5'- ------gCACCCUCCUCcuguUCCUCAUCa -3'
miRNA:   3'- ugcaguaGUGGGAGGAGu---GGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 43326 0.69 0.876661
Target:  5'- aGCGUCGUCGCCCcggaCUgCGCCCgcggucugcuauUCGUCc -3'
miRNA:   3'- -UGCAGUAGUGGGag--GA-GUGGG------------AGUAG- -5'
30180 3' -55.3 NC_006273.1 + 74800 0.69 0.862175
Target:  5'- uCGUCGUCACCa-CCUCccCCCUCGa- -3'
miRNA:   3'- uGCAGUAGUGGgaGGAGu-GGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 121028 0.81 0.306237
Target:  5'- uCGUCGUCGCCCUgggcggCACCCUCGUCg -3'
miRNA:   3'- uGCAGUAGUGGGAgga---GUGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 74909 0.76 0.533868
Target:  5'- cACGUCGUUuUCCUCCUCuCCgUCGUCa -3'
miRNA:   3'- -UGCAGUAGuGGGAGGAGuGGgAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 99774 0.75 0.583033
Target:  5'- aGCGUCGUCACUgUCUUCGUCCUCuUCa -3'
miRNA:   3'- -UGCAGUAGUGGgAGGAGUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 218091 0.74 0.612985
Target:  5'- uCGUCAUCAUCCUCUcCcuGCuCCUCAUCg -3'
miRNA:   3'- uGCAGUAGUGGGAGGaG--UG-GGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 41145 0.73 0.673061
Target:  5'- uCGUCGUCuuCCUCCUCGCUgUCuUCg -3'
miRNA:   3'- uGCAGUAGugGGAGGAGUGGgAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 105829 0.72 0.722306
Target:  5'- uGCGUCGgagcucuuuUCAUCUUCUUCugUCUCGUCg -3'
miRNA:   3'- -UGCAGU---------AGUGGGAGGAGugGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 52355 0.7 0.846892
Target:  5'- uGCGUCuGUCGCCa--CUCGgCCUCGUCc -3'
miRNA:   3'- -UGCAG-UAGUGGgagGAGUgGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 193390 0.69 0.861429
Target:  5'- aACGUCGUCcucCCCUUCUucaccgccccaccCACCCUCGg- -3'
miRNA:   3'- -UGCAGUAGu--GGGAGGA-------------GUGGGAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.