Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30180 | 3' | -55.3 | NC_006273.1 | + | 218091 | 0.74 | 0.612985 |
Target: 5'- uCGUCAUCAUCCUCUcCcuGCuCCUCAUCg -3' miRNA: 3'- uGCAGUAGUGGGAGGaG--UG-GGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 41145 | 0.73 | 0.673061 |
Target: 5'- uCGUCGUCuuCCUCCUCGCUgUCuUCg -3' miRNA: 3'- uGCAGUAGugGGAGGAGUGGgAGuAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 105829 | 0.72 | 0.722306 |
Target: 5'- uGCGUCGgagcucuuuUCAUCUUCUUCugUCUCGUCg -3' miRNA: 3'- -UGCAGU---------AGUGGGAGGAGugGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 52355 | 0.7 | 0.846892 |
Target: 5'- uGCGUCuGUCGCCa--CUCGgCCUCGUCc -3' miRNA: 3'- -UGCAG-UAGUGGgagGAGUgGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 125335 | 0.69 | 0.896168 |
Target: 5'- -gGUCGUCGCcguCCUCCUCACCggacggcCUCAc- -3' miRNA: 3'- ugCAGUAGUG---GGAGGAGUGG-------GAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 172317 | 0.69 | 0.883592 |
Target: 5'- ------gCACCCUCCUCcuguUCCUCAUCa -3' miRNA: 3'- ugcaguaGUGGGAGGAGu---GGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 43326 | 0.69 | 0.876661 |
Target: 5'- aGCGUCGUCGCCCcggaCUgCGCCCgcggucugcuauUCGUCc -3' miRNA: 3'- -UGCAGUAGUGGGag--GA-GUGGG------------AGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 74800 | 0.69 | 0.862175 |
Target: 5'- uCGUCGUCACCa-CCUCccCCCUCGa- -3' miRNA: 3'- uGCAGUAGUGGgaGGAGu-GGGAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 193390 | 0.69 | 0.861429 |
Target: 5'- aACGUCGUCcucCCCUUCUucaccgccccaccCACCCUCGg- -3' miRNA: 3'- -UGCAGUAGu--GGGAGGA-------------GUGGGAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 128751 | 0.7 | 0.830862 |
Target: 5'- aGCGUCGUCGCCauuaCCgUCGCCgCUCAa- -3' miRNA: 3'- -UGCAGUAGUGGga--GG-AGUGG-GAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 102657 | 0.7 | 0.822583 |
Target: 5'- uCGUCGUCuCCCcggcgcUCCUCACCaCUCGcaUCa -3' miRNA: 3'- uGCAGUAGuGGG------AGGAGUGG-GAGU--AG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 21435 | 0.71 | 0.808994 |
Target: 5'- cCGUCcucGUCGCCUUCCagcuuaccgccaccgUCGCCCUCAg- -3' miRNA: 3'- uGCAG---UAGUGGGAGG---------------AGUGGGAGUag -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 198155 | 0.71 | 0.769691 |
Target: 5'- cCGUCG-CGCCUUCCUCugCCUgggcacgcgCGUCg -3' miRNA: 3'- uGCAGUaGUGGGAGGAGugGGA---------GUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 94621 | 0.71 | 0.769691 |
Target: 5'- gGCGUCAUCgACCCggCCUgcugaCGCgCUCGUCu -3' miRNA: 3'- -UGCAGUAG-UGGGa-GGA-----GUGgGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 226310 | 0.72 | 0.751029 |
Target: 5'- gACGUCGUCGUCCUCgUCcUCUUCGUCg -3' miRNA: 3'- -UGCAGUAGUGGGAGgAGuGGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 72265 | 0.73 | 0.683007 |
Target: 5'- cGCcUCAgccggaGCCCUCCUCAUCCUCcUCa -3' miRNA: 3'- -UGcAGUag----UGGGAGGAGUGGGAGuAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 30264 | 0.73 | 0.673061 |
Target: 5'- uGCGUCAUCACCCgaucCCUCcUCCUgAUa -3' miRNA: 3'- -UGCAGUAGUGGGa---GGAGuGGGAgUAg -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 130040 | 0.74 | 0.643061 |
Target: 5'- -gGUCAcuUCAUCCUCCUCgucGCCCUCuUCc -3' miRNA: 3'- ugCAGU--AGUGGGAGGAG---UGGGAGuAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 89697 | 0.78 | 0.431944 |
Target: 5'- cCGUCGUCAUCgUCCUCcCCUUCGUCc -3' miRNA: 3'- uGCAGUAGUGGgAGGAGuGGGAGUAG- -5' |
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30180 | 3' | -55.3 | NC_006273.1 | + | 123884 | 0.66 | 0.972949 |
Target: 5'- cGCGU-GUC-CCCUCUUCuCCCUUcgCa -3' miRNA: 3'- -UGCAgUAGuGGGAGGAGuGGGAGuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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