miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 3' -55.3 NC_006273.1 + 189457 0.86 0.156697
Target:  5'- uCGUCGUCGUCCUCCUCuCCCUCGUCg -3'
miRNA:   3'- uGCAGUAGUGGGAGGAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 206258 0.67 0.952971
Target:  5'- cCGUCAaggccgccucuucUgGCCCUCCgcCACCCUUcgCu -3'
miRNA:   3'- uGCAGU-------------AgUGGGAGGa-GUGGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 202150 0.67 0.953361
Target:  5'- cCGUCGUCGCCgCcCCgggGCCCUCGg- -3'
miRNA:   3'- uGCAGUAGUGG-GaGGag-UGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 123884 0.66 0.972949
Target:  5'- cGCGU-GUC-CCCUCUUCuCCCUUcgCa -3'
miRNA:   3'- -UGCAgUAGuGGGAGGAGuGGGAGuaG- -5'
30180 3' -55.3 NC_006273.1 + 72265 0.73 0.683007
Target:  5'- cGCcUCAgccggaGCCCUCCUCAUCCUCcUCa -3'
miRNA:   3'- -UGcAGUag----UGGGAGGAGUGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 226310 0.72 0.751029
Target:  5'- gACGUCGUCGUCCUCgUCcUCUUCGUCg -3'
miRNA:   3'- -UGCAGUAGUGGGAGgAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 198155 0.71 0.769691
Target:  5'- cCGUCG-CGCCUUCCUCugCCUgggcacgcgCGUCg -3'
miRNA:   3'- uGCAGUaGUGGGAGGAGugGGA---------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 21435 0.71 0.808994
Target:  5'- cCGUCcucGUCGCCUUCCagcuuaccgccaccgUCGCCCUCAg- -3'
miRNA:   3'- uGCAG---UAGUGGGAGG---------------AGUGGGAGUag -5'
30180 3' -55.3 NC_006273.1 + 131216 0.7 0.853098
Target:  5'- uACGUCAUCucaaccaggucuUCCUcugccccaCCUCGCCCUCGUg -3'
miRNA:   3'- -UGCAGUAGu-----------GGGA--------GGAGUGGGAGUAg -5'
30180 3' -55.3 NC_006273.1 + 27130 0.67 0.935986
Target:  5'- gGCG-CAUCACCCgCCUCauggACCCgccgcugcCGUCg -3'
miRNA:   3'- -UGCaGUAGUGGGaGGAG----UGGGa-------GUAG- -5'
30180 3' -55.3 NC_006273.1 + 76086 0.69 0.890309
Target:  5'- cUGUCGUCuCCCUUCUCGCUCUgGc- -3'
miRNA:   3'- uGCAGUAGuGGGAGGAGUGGGAgUag -5'
30180 3' -55.3 NC_006273.1 + 128751 0.7 0.830862
Target:  5'- aGCGUCGUCGCCauuaCCgUCGCCgCUCAa- -3'
miRNA:   3'- -UGCAGUAGUGGga--GG-AGUGG-GAGUag -5'
30180 3' -55.3 NC_006273.1 + 89697 0.78 0.431944
Target:  5'- cCGUCGUCAUCgUCCUCcCCUUCGUCc -3'
miRNA:   3'- uGCAGUAGUGGgAGGAGuGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 115063 0.68 0.925935
Target:  5'- aAUGUCucaggCAUCgUCCUCgcccggugagggACCCUCGUCg -3'
miRNA:   3'- -UGCAGua---GUGGgAGGAG------------UGGGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 130040 0.74 0.643061
Target:  5'- -gGUCAcuUCAUCCUCCUCgucGCCCUCuUCc -3'
miRNA:   3'- ugCAGU--AGUGGGAGGAG---UGGGAGuAG- -5'
30180 3' -55.3 NC_006273.1 + 102657 0.7 0.822583
Target:  5'- uCGUCGUCuCCCcggcgcUCCUCACCaCUCGcaUCa -3'
miRNA:   3'- uGCAGUAGuGGG------AGGAGUGG-GAGU--AG- -5'
30180 3' -55.3 NC_006273.1 + 99411 0.67 0.931075
Target:  5'- aGCGUC-UCGgCCUCCUCGuuacucagcaccUCCUgGUCa -3'
miRNA:   3'- -UGCAGuAGUgGGAGGAGU------------GGGAgUAG- -5'
30180 3' -55.3 NC_006273.1 + 97053 0.67 0.953361
Target:  5'- gGCGUCAUCGCUCUCacagaaaaaagUCGCggguuCCUCGUUg -3'
miRNA:   3'- -UGCAGUAGUGGGAGg----------AGUG-----GGAGUAG- -5'
30180 3' -55.3 NC_006273.1 + 30264 0.73 0.673061
Target:  5'- uGCGUCAUCACCCgaucCCUCcUCCUgAUa -3'
miRNA:   3'- -UGCAGUAGUGGGa---GGAGuGGGAgUAg -5'
30180 3' -55.3 NC_006273.1 + 94621 0.71 0.769691
Target:  5'- gGCGUCAUCgACCCggCCUgcugaCGCgCUCGUCu -3'
miRNA:   3'- -UGCAGUAG-UGGGa-GGA-----GUGgGAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.