miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30180 5' -56.7 NC_006273.1 + 119377 0.66 0.957947
Target:  5'- cGGGGCU-GGacuuUGAGGCGGCCguguuCGAUGAa -3'
miRNA:   3'- -UCCUGAgCCc---ACUCUGCUGG-----GCUACU- -5'
30180 5' -56.7 NC_006273.1 + 103401 0.66 0.957947
Target:  5'- cAGGAuCUUGGGcacguuguUGgcuAGACGACugCCGAUGAg -3'
miRNA:   3'- -UCCU-GAGCCC--------AC---UCUGCUG--GGCUACU- -5'
30180 5' -56.7 NC_006273.1 + 101407 0.66 0.950429
Target:  5'- gGGGACgcaGGGUcggugaugaugcGAGGCGGCgCCGAcGGu -3'
miRNA:   3'- -UCCUGag-CCCA------------CUCUGCUG-GGCUaCU- -5'
30180 5' -56.7 NC_006273.1 + 1108 0.66 0.946353
Target:  5'- cGGGAUggCGGGcUGuuGCGugCCGggGAc -3'
miRNA:   3'- -UCCUGa-GCCC-ACucUGCugGGCuaCU- -5'
30180 5' -56.7 NC_006273.1 + 41046 0.66 0.946353
Target:  5'- cGGGAUggCGGGcUGuuGCGugCCGggGAc -3'
miRNA:   3'- -UCCUGa-GCCC-ACucUGCugGGCuaCU- -5'
30180 5' -56.7 NC_006273.1 + 177430 0.66 0.942063
Target:  5'- -uGACUCGGG-GAuGACG-CCCGAc-- -3'
miRNA:   3'- ucCUGAGCCCaCU-CUGCuGGGCUacu -5'
30180 5' -56.7 NC_006273.1 + 45856 0.67 0.937556
Target:  5'- cGGACUC-GGUGucGGCGGCCCug-GAa -3'
miRNA:   3'- uCCUGAGcCCACu-CUGCUGGGcuaCU- -5'
30180 5' -56.7 NC_006273.1 + 129501 0.67 0.937556
Target:  5'- cGGAgCUCGGGgaaAGcagcGCGACCCGGaGAa -3'
miRNA:   3'- uCCU-GAGCCCac-UC----UGCUGGGCUaCU- -5'
30180 5' -56.7 NC_006273.1 + 232961 0.67 0.927888
Target:  5'- gAGuGCUCGGGaUGGGugGACgUGggGAc -3'
miRNA:   3'- -UCcUGAGCCC-ACUCugCUGgGCuaCU- -5'
30180 5' -56.7 NC_006273.1 + 160583 0.67 0.927888
Target:  5'- uGGGCUCGaggggggaGGUGGuGACGACgaggaCGGUGAa -3'
miRNA:   3'- uCCUGAGC--------CCACU-CUGCUGg----GCUACU- -5'
30180 5' -56.7 NC_006273.1 + 130982 0.67 0.917342
Target:  5'- cGGACUCGcGGcGGGugGcGCCCGucuucgccGUGAa -3'
miRNA:   3'- uCCUGAGC-CCaCUCugC-UGGGC--------UACU- -5'
30180 5' -56.7 NC_006273.1 + 144433 0.68 0.905923
Target:  5'- cGGACgguUCGGGUGGcGGCGGCUCGc--- -3'
miRNA:   3'- uCCUG---AGCCCACU-CUGCUGGGCuacu -5'
30180 5' -56.7 NC_006273.1 + 197776 0.68 0.905923
Target:  5'- uGGGucCUCGGGgacAGcCGACCCGAcGAu -3'
miRNA:   3'- -UCCu-GAGCCCac-UCuGCUGGGCUaCU- -5'
30180 5' -56.7 NC_006273.1 + 151994 0.68 0.905923
Target:  5'- cGGGC-CGGGUGGcGGCGgcagcaGCCCGAcgUGGc -3'
miRNA:   3'- uCCUGaGCCCACU-CUGC------UGGGCU--ACU- -5'
30180 5' -56.7 NC_006273.1 + 40475 0.68 0.899889
Target:  5'- cGGGAUacgUCGGcGUggucGAGGCGGCCCGGc-- -3'
miRNA:   3'- -UCCUG---AGCC-CA----CUCUGCUGGGCUacu -5'
30180 5' -56.7 NC_006273.1 + 141042 0.68 0.899889
Target:  5'- cAGGGC---GGUGGGACgGGCCCGcgGAc -3'
miRNA:   3'- -UCCUGagcCCACUCUG-CUGGGCuaCU- -5'
30180 5' -56.7 NC_006273.1 + 189326 0.69 0.859336
Target:  5'- -cGGCgucggCGGGUGGGugGccACCCGcAUGAg -3'
miRNA:   3'- ucCUGa----GCCCACUCugC--UGGGC-UACU- -5'
30180 5' -56.7 NC_006273.1 + 83347 0.69 0.85189
Target:  5'- uGGGACcCGGcggcgccgugGUGGGAgGACCCGcgGGc -3'
miRNA:   3'- -UCCUGaGCC----------CACUCUgCUGGGCuaCU- -5'
30180 5' -56.7 NC_006273.1 + 119120 0.7 0.812042
Target:  5'- gGGGACUgCGGGagaaacucgGAGACGGCgCCGcgcAUGAc -3'
miRNA:   3'- -UCCUGA-GCCCa--------CUCUGCUG-GGC---UACU- -5'
30180 5' -56.7 NC_006273.1 + 185613 0.7 0.812042
Target:  5'- ----aUCGGGUGGGAgCGGCCCGGcgGAa -3'
miRNA:   3'- uccugAGCCCACUCU-GCUGGGCUa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.