Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30180 | 5' | -56.7 | NC_006273.1 | + | 177430 | 0.66 | 0.942063 |
Target: 5'- -uGACUCGGG-GAuGACG-CCCGAc-- -3' miRNA: 3'- ucCUGAGCCCaCU-CUGCuGGGCUacu -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 119377 | 0.66 | 0.957947 |
Target: 5'- cGGGGCU-GGacuuUGAGGCGGCCguguuCGAUGAa -3' miRNA: 3'- -UCCUGAgCCc---ACUCUGCUGG-----GCUACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 103401 | 0.66 | 0.957947 |
Target: 5'- cAGGAuCUUGGGcacguuguUGgcuAGACGACugCCGAUGAg -3' miRNA: 3'- -UCCU-GAGCCC--------AC---UCUGCUG--GGCUACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 41046 | 0.66 | 0.946353 |
Target: 5'- cGGGAUggCGGGcUGuuGCGugCCGggGAc -3' miRNA: 3'- -UCCUGa-GCCC-ACucUGCugGGCuaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 101407 | 0.66 | 0.950429 |
Target: 5'- gGGGACgcaGGGUcggugaugaugcGAGGCGGCgCCGAcGGu -3' miRNA: 3'- -UCCUGag-CCCA------------CUCUGCUG-GGCUaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 1108 | 0.66 | 0.946353 |
Target: 5'- cGGGAUggCGGGcUGuuGCGugCCGggGAc -3' miRNA: 3'- -UCCUGa-GCCC-ACucUGCugGGCuaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 232961 | 0.67 | 0.927888 |
Target: 5'- gAGuGCUCGGGaUGGGugGACgUGggGAc -3' miRNA: 3'- -UCcUGAGCCC-ACUCugCUGgGCuaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 160583 | 0.67 | 0.927888 |
Target: 5'- uGGGCUCGaggggggaGGUGGuGACGACgaggaCGGUGAa -3' miRNA: 3'- uCCUGAGC--------CCACU-CUGCUGg----GCUACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 45856 | 0.67 | 0.937556 |
Target: 5'- cGGACUC-GGUGucGGCGGCCCug-GAa -3' miRNA: 3'- uCCUGAGcCCACu-CUGCUGGGcuaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 129501 | 0.67 | 0.937556 |
Target: 5'- cGGAgCUCGGGgaaAGcagcGCGACCCGGaGAa -3' miRNA: 3'- uCCU-GAGCCCac-UC----UGCUGGGCUaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 130982 | 0.67 | 0.917342 |
Target: 5'- cGGACUCGcGGcGGGugGcGCCCGucuucgccGUGAa -3' miRNA: 3'- uCCUGAGC-CCaCUCugC-UGGGC--------UACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 141042 | 0.68 | 0.899889 |
Target: 5'- cAGGGC---GGUGGGACgGGCCCGcgGAc -3' miRNA: 3'- -UCCUGagcCCACUCUG-CUGGGCuaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 144433 | 0.68 | 0.905923 |
Target: 5'- cGGACgguUCGGGUGGcGGCGGCUCGc--- -3' miRNA: 3'- uCCUG---AGCCCACU-CUGCUGGGCuacu -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 40475 | 0.68 | 0.899889 |
Target: 5'- cGGGAUacgUCGGcGUggucGAGGCGGCCCGGc-- -3' miRNA: 3'- -UCCUG---AGCC-CA----CUCUGCUGGGCUacu -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 197776 | 0.68 | 0.905923 |
Target: 5'- uGGGucCUCGGGgacAGcCGACCCGAcGAu -3' miRNA: 3'- -UCCu-GAGCCCac-UCuGCUGGGCUaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 151994 | 0.68 | 0.905923 |
Target: 5'- cGGGC-CGGGUGGcGGCGgcagcaGCCCGAcgUGGc -3' miRNA: 3'- uCCUGaGCCCACU-CUGC------UGGGCU--ACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 189326 | 0.69 | 0.859336 |
Target: 5'- -cGGCgucggCGGGUGGGugGccACCCGcAUGAg -3' miRNA: 3'- ucCUGa----GCCCACUCugC--UGGGC-UACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 83347 | 0.69 | 0.85189 |
Target: 5'- uGGGACcCGGcggcgccgugGUGGGAgGACCCGcgGGc -3' miRNA: 3'- -UCCUGaGCC----------CACUCUgCUGGGCuaCU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 119120 | 0.7 | 0.812042 |
Target: 5'- gGGGACUgCGGGagaaacucgGAGACGGCgCCGcgcAUGAc -3' miRNA: 3'- -UCCUGA-GCCCa--------CUCUGCUG-GGC---UACU- -5' |
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30180 | 5' | -56.7 | NC_006273.1 | + | 8244 | 0.7 | 0.803595 |
Target: 5'- cGGGACg-GGGUGGGACGAgagCCGGUa- -3' miRNA: 3'- -UCCUGagCCCACUCUGCUg--GGCUAcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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