Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30180 | 5' | -56.7 | NC_006273.1 | + | 1108 | 0.66 | 0.946353 |
Target: 5'- cGGGAUggCGGGcUGuuGCGugCCGggGAc -3' miRNA: 3'- -UCCUGa-GCCC-ACucUGCugGGCuaCU- -5' |
|||||||
30180 | 5' | -56.7 | NC_006273.1 | + | 41046 | 0.66 | 0.946353 |
Target: 5'- cGGGAUggCGGGcUGuuGCGugCCGggGAc -3' miRNA: 3'- -UCCUGa-GCCC-ACucUGCugGGCuaCU- -5' |
|||||||
30180 | 5' | -56.7 | NC_006273.1 | + | 101407 | 0.66 | 0.950429 |
Target: 5'- gGGGACgcaGGGUcggugaugaugcGAGGCGGCgCCGAcGGu -3' miRNA: 3'- -UCCUGag-CCCA------------CUCUGCUG-GGCUaCU- -5' |
|||||||
30180 | 5' | -56.7 | NC_006273.1 | + | 103401 | 0.66 | 0.957947 |
Target: 5'- cAGGAuCUUGGGcacguuguUGgcuAGACGACugCCGAUGAg -3' miRNA: 3'- -UCCU-GAGCCC--------AC---UCUGCUG--GGCUACU- -5' |
|||||||
30180 | 5' | -56.7 | NC_006273.1 | + | 119377 | 0.66 | 0.957947 |
Target: 5'- cGGGGCU-GGacuuUGAGGCGGCCguguuCGAUGAa -3' miRNA: 3'- -UCCUGAgCCc---ACUCUGCUGG-----GCUACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home