Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30181 | 3' | -57.6 | NC_006273.1 | + | 72598 | 0.66 | 0.926128 |
Target: 5'- -cGGcAGcGAcaugcGGCCGCuGCCGCCGccACCa -3' miRNA: 3'- cuCC-UC-CU-----CCGGCG-CGGUGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 101365 | 0.66 | 0.926128 |
Target: 5'- cAGGcGGcGGCCGUGCgCAUCGccuGCCu -3' miRNA: 3'- cUCCuCCuCCGGCGCG-GUGGUuu-UGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 17574 | 0.66 | 0.926128 |
Target: 5'- -cGGAcGGAGGCCGagGUUuCgGAAGCCg -3' miRNA: 3'- cuCCU-CCUCCGGCg-CGGuGgUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 234752 | 0.66 | 0.926128 |
Target: 5'- cAGGAacccGGAGGaacaCGCGCaa-CAGGGCCg -3' miRNA: 3'- cUCCU----CCUCCg---GCGCGgugGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 39860 | 0.66 | 0.926128 |
Target: 5'- cAGGAacccGGAGGaacaCGCGCaa-CAGGGCCg -3' miRNA: 3'- cUCCU----CCUCCg---GCGCGgugGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 36764 | 0.66 | 0.926128 |
Target: 5'- -cGGcGGGuGGCCugaGCaCGCCGAGGCCc -3' miRNA: 3'- cuCC-UCCuCCGGcg-CG-GUGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 196621 | 0.66 | 0.926128 |
Target: 5'- -cGGAcGGGaGCUGCGCCGgCGguGGGCCg -3' miRNA: 3'- cuCCUcCUC-CGGCGCGGUgGU--UUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 116799 | 0.66 | 0.926128 |
Target: 5'- cGAcGuGGAGGCCGCgacGUCGCUuucgggcucgGAAACCa -3' miRNA: 3'- -CUcCuCCUCCGGCG---CGGUGG----------UUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 56642 | 0.66 | 0.926128 |
Target: 5'- -uGGAGGAaagaccguGGUCGUGaUCACCGccGCCg -3' miRNA: 3'- cuCCUCCU--------CCGGCGC-GGUGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 262 | 0.66 | 0.920859 |
Target: 5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3' miRNA: 3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 147925 | 0.66 | 0.920859 |
Target: 5'- aGGGGAGGAGugucagacacaGCCG-GUCAUCuccGAGCCc -3' miRNA: 3'- -CUCCUCCUC-----------CGGCgCGGUGGu--UUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 173807 | 0.66 | 0.920859 |
Target: 5'- -cGGuGGccaaacGGCCGCGCgACCc-GGCCg -3' miRNA: 3'- cuCCuCCu-----CCGGCGCGgUGGuuUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 5629 | 0.66 | 0.920859 |
Target: 5'- -cGGuGGGGG-CGUGCC-CCGcAGACCc -3' miRNA: 3'- cuCCuCCUCCgGCGCGGuGGU-UUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 82071 | 0.66 | 0.920859 |
Target: 5'- aGAGGAgacGGAGGagugaaCG-GUCGCCGuuGCCg -3' miRNA: 3'- -CUCCU---CCUCCg-----GCgCGGUGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 212050 | 0.66 | 0.920859 |
Target: 5'- cGAGGGucgcGGGGGUgGgGgCGCCcAGGCCg -3' miRNA: 3'- -CUCCU----CCUCCGgCgCgGUGGuUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 40200 | 0.66 | 0.920859 |
Target: 5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3' miRNA: 3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 235093 | 0.66 | 0.920859 |
Target: 5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3' miRNA: 3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 98546 | 0.66 | 0.92032 |
Target: 5'- aGAGGGGacgucGGGGCCcucCGUCgcaccggGCCGAAGCCa -3' miRNA: 3'- -CUCCUC-----CUCCGGc--GCGG-------UGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 20906 | 0.66 | 0.92032 |
Target: 5'- cGAGGaAGGuGGaCCGUgugaaucGCCGCCAAuGACg -3' miRNA: 3'- -CUCC-UCCuCC-GGCG-------CGGUGGUU-UUGg -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 93713 | 0.66 | 0.915368 |
Target: 5'- --cGAGcGAGGCCGaGCgAgcCCGAGACCg -3' miRNA: 3'- cucCUC-CUCCGGCgCGgU--GGUUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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