miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 188736 0.66 0.903727
Target:  5'- --cGAGGAGGCgGgGCUAacuCgGAAACCg -3'
miRNA:   3'- cucCUCCUCCGgCgCGGU---GgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 262 0.66 0.920859
Target:  5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3'
miRNA:   3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 20906 0.66 0.92032
Target:  5'- cGAGGaAGGuGGaCCGUgugaaucGCCGCCAAuGACg -3'
miRNA:   3'- -CUCC-UCCuCC-GGCG-------CGGUGGUU-UUGg -5'
30181 3' -57.6 NC_006273.1 + 231451 0.66 0.909657
Target:  5'- gGGGGGGGGGGCauauaGUaGUCGCUuuuACCg -3'
miRNA:   3'- -CUCCUCCUCCGg----CG-CGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 41518 0.66 0.909657
Target:  5'- uGAGGAuGGcAGcGCCgGCGCCAgCAGGAa- -3'
miRNA:   3'- -CUCCU-CC-UC-CGG-CGCGGUgGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 212050 0.66 0.920859
Target:  5'- cGAGGGucgcGGGGGUgGgGgCGCCcAGGCCg -3'
miRNA:   3'- -CUCCU----CCUCCGgCgCgGUGGuUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 207146 0.66 0.915368
Target:  5'- cAGGuAGGGGGUugucaCGCGCCACgGuauGAGCa -3'
miRNA:   3'- cUCC-UCCUCCG-----GCGCGGUGgU---UUUGg -5'
30181 3' -57.6 NC_006273.1 + 98546 0.66 0.92032
Target:  5'- aGAGGGGacgucGGGGCCcucCGUCgcaccggGCCGAAGCCa -3'
miRNA:   3'- -CUCCUC-----CUCCGGc--GCGG-------UGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 1007 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 147250 0.66 0.903727
Target:  5'- --cGAGGcgcuGGCCGCGUCGCUGAugGACa -3'
miRNA:   3'- cucCUCCu---CCGGCGCGGUGGUU--UUGg -5'
30181 3' -57.6 NC_006273.1 + 56642 0.66 0.926128
Target:  5'- -uGGAGGAaagaccguGGUCGUGaUCACCGccGCCg -3'
miRNA:   3'- cuCCUCCU--------CCGGCGC-GGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 40945 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 83370 0.66 0.903727
Target:  5'- gGAGGAcccgcGGgccacgucGGGCUGCuGCCGCCGccACCc -3'
miRNA:   3'- -CUCCU-----CC--------UCCGGCG-CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 196621 0.66 0.926128
Target:  5'- -cGGAcGGGaGCUGCGCCGgCGguGGGCCg -3'
miRNA:   3'- cuCCUcCUC-CGGCGCGGUgGU--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 72979 0.66 0.907901
Target:  5'- gGAGuccGAGGAGuGCUGaccgccgcucccgcCGCCGCCAccGCCa -3'
miRNA:   3'- -CUC---CUCCUC-CGGC--------------GCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 235093 0.66 0.920859
Target:  5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3'
miRNA:   3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 234752 0.66 0.926128
Target:  5'- cAGGAacccGGAGGaacaCGCGCaa-CAGGGCCg -3'
miRNA:   3'- cUCCU----CCUCCg---GCGCGgugGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 78675 0.66 0.901905
Target:  5'- cGAGaAGG-GGCCGggguccgcgggcacCGCCGCCGGAGgCg -3'
miRNA:   3'- -CUCcUCCuCCGGC--------------GCGGUGGUUUUgG- -5'
30181 3' -57.6 NC_006273.1 + 72598 0.66 0.926128
Target:  5'- -cGGcAGcGAcaugcGGCCGCuGCCGCCGccACCa -3'
miRNA:   3'- cuCC-UC-CU-----CCGGCG-CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 116799 0.66 0.926128
Target:  5'- cGAcGuGGAGGCCGCgacGUCGCUuucgggcucgGAAACCa -3'
miRNA:   3'- -CUcCuCCUCCGGCG---CGGUGG----------UUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.