miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 20906 0.66 0.92032
Target:  5'- cGAGGaAGGuGGaCCGUgugaaucGCCGCCAAuGACg -3'
miRNA:   3'- -CUCC-UCCuCC-GGCG-------CGGUGGUU-UUGg -5'
30181 3' -57.6 NC_006273.1 + 98546 0.66 0.92032
Target:  5'- aGAGGGGacgucGGGGCCcucCGUCgcaccggGCCGAAGCCa -3'
miRNA:   3'- -CUCCUC-----CUCCGGc--GCGG-------UGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 40945 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 157367 0.66 0.915368
Target:  5'- -uGGuGG-GGCUGCGUCGCCugcGACg -3'
miRNA:   3'- cuCCuCCuCCGGCGCGGUGGuu-UUGg -5'
30181 3' -57.6 NC_006273.1 + 93713 0.66 0.915368
Target:  5'- --cGAGcGAGGCCGaGCgAgcCCGAGACCg -3'
miRNA:   3'- cucCUC-CUCCGGCgCGgU--GGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 40200 0.66 0.920859
Target:  5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3'
miRNA:   3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 72598 0.66 0.926128
Target:  5'- -cGGcAGcGAcaugcGGCCGCuGCCGCCGccACCa -3'
miRNA:   3'- cuCC-UC-CU-----CCGGCG-CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 101365 0.66 0.926128
Target:  5'- cAGGcGGcGGCCGUGCgCAUCGccuGCCu -3'
miRNA:   3'- cUCCuCCuCCGGCGCG-GUGGUuu-UGG- -5'
30181 3' -57.6 NC_006273.1 + 136684 0.66 0.909657
Target:  5'- cGAGGAGacGAcgaccGGCCGguCGCCGCC---GCCg -3'
miRNA:   3'- -CUCCUC--CU-----CCGGC--GCGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 82071 0.66 0.920859
Target:  5'- aGAGGAgacGGAGGagugaaCG-GUCGCCGuuGCCg -3'
miRNA:   3'- -CUCCU---CCUCCg-----GCgCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 207146 0.66 0.915368
Target:  5'- cAGGuAGGGGGUugucaCGCGCCACgGuauGAGCa -3'
miRNA:   3'- cUCC-UCCUCCG-----GCGCGGUGgU---UUUGg -5'
30181 3' -57.6 NC_006273.1 + 56844 0.66 0.909657
Target:  5'- cGAaGA-GAGGCUGcCGCUACCAccGCCg -3'
miRNA:   3'- -CUcCUcCUCCGGC-GCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 1007 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 5629 0.66 0.920859
Target:  5'- -cGGuGGGGG-CGUGCC-CCGcAGACCc -3'
miRNA:   3'- cuCCuCCUCCgGCGCGGuGGU-UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 41518 0.66 0.909657
Target:  5'- uGAGGAuGGcAGcGCCgGCGCCAgCAGGAa- -3'
miRNA:   3'- -CUCCU-CC-UC-CGG-CGCGGUgGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 231451 0.66 0.909657
Target:  5'- gGGGGGGGGGGCauauaGUaGUCGCUuuuACCg -3'
miRNA:   3'- -CUCCUCCUCCGg----CG-CGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 188736 0.66 0.903727
Target:  5'- --cGAGGAGGCgGgGCUAacuCgGAAACCg -3'
miRNA:   3'- cucCUCCUCCGgCgCGGU---GgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 105353 0.67 0.87159
Target:  5'- cGAGGAGGAugaagugaccgugauGUCGcCGUCACCcGAGCCc -3'
miRNA:   3'- -CUCCUCCUc--------------CGGC-GCGGUGGuUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 112969 0.67 0.870882
Target:  5'- uGGGAG--GGCCGCGauCCGCCGGAcuCCg -3'
miRNA:   3'- cUCCUCcuCCGGCGC--GGUGGUUUu-GG- -5'
30181 3' -57.6 NC_006273.1 + 153766 0.67 0.891218
Target:  5'- uGGGAGcGcaAGGCCGCuucggccuCCGCCGcgGCCg -3'
miRNA:   3'- cUCCUC-C--UCCGGCGc-------GGUGGUuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.