Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30181 | 3' | -57.6 | NC_006273.1 | + | 171343 | 1.12 | 0.002031 |
Target: 5'- aGAGGAGGAGGCCGCGCCACCAAAACCg -3' miRNA: 3'- -CUCCUCCUCCGGCGCGGUGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 37266 | 0.78 | 0.329104 |
Target: 5'- cGAGGAGGAagacGCCGUgGCCGCCGAgcAGCCc -3' miRNA: 3'- -CUCCUCCUc---CGGCG-CGGUGGUU--UUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 117224 | 0.76 | 0.390176 |
Target: 5'- uGGGGAGGAagaGGCCGCagaggggagaGCCGCCGAAAgUa -3' miRNA: 3'- -CUCCUCCU---CCGGCG----------CGGUGGUUUUgG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 45890 | 0.76 | 0.398314 |
Target: 5'- cAGcGcGGcGGCCGgGCCGCCGAGGCCg -3' miRNA: 3'- cUC-CuCCuCCGGCgCGGUGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 163910 | 0.76 | 0.423369 |
Target: 5'- cAGcGAGGAGGCUGCGaUCGCCGccGCCu -3' miRNA: 3'- cUC-CUCCUCCGGCGC-GGUGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 148002 | 0.76 | 0.423369 |
Target: 5'- -uGGAGGAGGuuGCGCCGC--AAGCg -3' miRNA: 3'- cuCCUCCUCCggCGCGGUGguUUUGg -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 182618 | 0.76 | 0.431928 |
Target: 5'- -uGGAcuuGGuGGCCGCGUCuugGCCGAGGCCg -3' miRNA: 3'- cuCCU---CCuCCGGCGCGG---UGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 172197 | 0.76 | 0.431928 |
Target: 5'- gGAGGcaaaGGcGAGGCCGCGCCgGCCGc-GCCg -3' miRNA: 3'- -CUCC----UC-CUCCGGCGCGG-UGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 79045 | 0.75 | 0.449344 |
Target: 5'- cAGGcu-GGGCCcacGCGCCACCAGAGCCu -3' miRNA: 3'- cUCCuccUCCGG---CGCGGUGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 101245 | 0.75 | 0.458196 |
Target: 5'- aGAGGAGGAcGCCcuaugucCGCCACgGAAGCCc -3' miRNA: 3'- -CUCCUCCUcCGGc------GCGGUGgUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 207348 | 0.75 | 0.467141 |
Target: 5'- gGAGaGGGaAGGUCGCGCCGCCGcAGCa -3' miRNA: 3'- -CUCcUCC-UCCGGCGCGGUGGUuUUGg -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 202238 | 0.75 | 0.485295 |
Target: 5'- cGAGGucGGAGGUCaCGCCACaUGAAGCCg -3' miRNA: 3'- -CUCCu-CCUCCGGcGCGGUG-GUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 157423 | 0.74 | 0.513134 |
Target: 5'- cGAGGAGGAggGGCCGCaGCCGuuggUgGAAACUa -3' miRNA: 3'- -CUCCUCCU--CCGGCG-CGGU----GgUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 72910 | 0.74 | 0.513134 |
Target: 5'- gGAGGAgGGAGGCgGcCGCCGCUccuucuGCCg -3' miRNA: 3'- -CUCCU-CCUCCGgC-GCGGUGGuuu---UGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 68030 | 0.73 | 0.538734 |
Target: 5'- gGAGGAcugccggcagguguGGGcucGGCCaGCGCCGCCGugGCCg -3' miRNA: 3'- -CUCCU--------------CCU---CCGG-CGCGGUGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 169182 | 0.73 | 0.541606 |
Target: 5'- -uGGcAGGAGGUCGCGUCACCucuugugacGCCu -3' miRNA: 3'- cuCC-UCCUCCGGCGCGGUGGuuu------UGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 109554 | 0.73 | 0.560878 |
Target: 5'- ----cGGAGGCC--GCCACCAAGGCCa -3' miRNA: 3'- cuccuCCUCCGGcgCGGUGGUUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 213968 | 0.73 | 0.560878 |
Target: 5'- cGAGGAcGGAGG-CGCGCaGCCAu-ACCg -3' miRNA: 3'- -CUCCU-CCUCCgGCGCGgUGGUuuUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 135120 | 0.73 | 0.560878 |
Target: 5'- cGAGGAGucAGGcCCGCGCCGCUuGGAACUg -3' miRNA: 3'- -CUCCUCc-UCC-GGCGCGGUGG-UUUUGG- -5' |
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30181 | 3' | -57.6 | NC_006273.1 | + | 99170 | 0.73 | 0.560878 |
Target: 5'- aAGGAGGGGGCCGUcauuaACgGAAACCg -3' miRNA: 3'- cUCCUCCUCCGGCGcgg--UGgUUUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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