miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 17379 0.73 0.569613
Target:  5'- aGAGGAGGGGaagacgcgguuGCCGCgcguaugGCCGCCG--GCCa -3'
miRNA:   3'- -CUCCUCCUC-----------CGGCG-------CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 34063 0.73 0.570585
Target:  5'- aGAGGAGu-GGUCGcCGCCGCCGuaguuACCg -3'
miRNA:   3'- -CUCCUCcuCCGGC-GCGGUGGUuu---UGG- -5'
30181 3' -57.6 NC_006273.1 + 21209 0.73 0.590115
Target:  5'- uGGGGGGuGGCCGgcUGCCGCCGcuguggcuGCCg -3'
miRNA:   3'- cUCCUCCuCCGGC--GCGGUGGUuu------UGG- -5'
30181 3' -57.6 NC_006273.1 + 72158 0.73 0.590115
Target:  5'- --cGAGGAGGCUgagGCGCCGCgGAuuCCu -3'
miRNA:   3'- cucCUCCUCCGG---CGCGGUGgUUuuGG- -5'
30181 3' -57.6 NC_006273.1 + 157011 0.72 0.599926
Target:  5'- aGAGGAGGAGaGCCG-GCaaagaagagggCGCgGAAACCa -3'
miRNA:   3'- -CUCCUCCUC-CGGCgCG-----------GUGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 140396 0.72 0.599926
Target:  5'- gGGGGAGGGGaGCCcaaccggaGCCGCCGagaggGAGCCg -3'
miRNA:   3'- -CUCCUCCUC-CGGcg------CGGUGGU-----UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 73753 0.72 0.609758
Target:  5'- -cGGccGAGGCCcggcagcgGCGCCGCCAGcggcGACCa -3'
miRNA:   3'- cuCCucCUCCGG--------CGCGGUGGUU----UUGG- -5'
30181 3' -57.6 NC_006273.1 + 183572 0.72 0.619607
Target:  5'- -cGGAGG-GGCCGCGC-ACUuuuGCCa -3'
miRNA:   3'- cuCCUCCuCCGGCGCGgUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 154549 0.72 0.619607
Target:  5'- aAGGAGGc-GCUGCGCC-CCGcgGCCg -3'
miRNA:   3'- cUCCUCCucCGGCGCGGuGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 141883 0.72 0.619607
Target:  5'- cGAGGccGGcGGCgGCGUCACCAcuuuGACCa -3'
miRNA:   3'- -CUCCu-CCuCCGgCGCGGUGGUu---UUGG- -5'
30181 3' -57.6 NC_006273.1 + 193650 0.72 0.629463
Target:  5'- uGGGAcGuGAGGCCGC-UCACgGAGACCa -3'
miRNA:   3'- cUCCU-C-CUCCGGCGcGGUGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 129224 0.72 0.638336
Target:  5'- uGAGGucguGGAacuugauGGCgUGCGCCGCCGcgGCCa -3'
miRNA:   3'- -CUCCu---CCU-------CCG-GCGCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 111323 0.72 0.646221
Target:  5'- aGGGGAGGccuggccgcauagcGcGGCCGCGCCGCUggGuUCa -3'
miRNA:   3'- -CUCCUCC--------------U-CCGGCGCGGUGGuuUuGG- -5'
30181 3' -57.6 NC_006273.1 + 140994 0.72 0.649176
Target:  5'- -cGGAGcGGGCCGCGCCcgguGCCc-GGCCc -3'
miRNA:   3'- cuCCUCcUCCGGCGCGG----UGGuuUUGG- -5'
30181 3' -57.6 NC_006273.1 + 44431 0.71 0.659017
Target:  5'- uGGGuAGGAGGgcaCCGUGCC-CCGAGGCg -3'
miRNA:   3'- cUCC-UCCUCC---GGCGCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 31464 0.71 0.659017
Target:  5'- uGAGGcGGuGGCUGCGCCuCCucgucGGCCu -3'
miRNA:   3'- -CUCCuCCuCCGGCGCGGuGGuu---UUGG- -5'
30181 3' -57.6 NC_006273.1 + 139924 0.71 0.662948
Target:  5'- --cGAGGAGGCCGUaaauauggcgcugguGgCCugCGAGGCCg -3'
miRNA:   3'- cucCUCCUCCGGCG---------------C-GGugGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 95504 0.71 0.668838
Target:  5'- cGGGGAGGGucccGGCaCGgGCCGagGAGACCa -3'
miRNA:   3'- -CUCCUCCU----CCG-GCgCGGUggUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 220818 0.71 0.668838
Target:  5'- cAGGAGGAGG-CGCGaUCGCCAGGGa- -3'
miRNA:   3'- cUCCUCCUCCgGCGC-GGUGGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 44275 0.71 0.668838
Target:  5'- aGGGAGGAuGGCCGU-CCGUCGAAGCUg -3'
miRNA:   3'- cUCCUCCU-CCGGCGcGGUGGUUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.