miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 157367 0.66 0.915368
Target:  5'- -uGGuGG-GGCUGCGUCGCCugcGACg -3'
miRNA:   3'- cuCCuCCuCCGGCGCGGUGGuu-UUGg -5'
30181 3' -57.6 NC_006273.1 + 93713 0.66 0.915368
Target:  5'- --cGAGcGAGGCCGaGCgAgcCCGAGACCg -3'
miRNA:   3'- cucCUC-CUCCGGCgCGgU--GGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 110693 0.66 0.909657
Target:  5'- cGAGGAGGuaaaggcuGCCGUGCagcaGCUGcAGACCa -3'
miRNA:   3'- -CUCCUCCuc------CGGCGCGg---UGGU-UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 20498 0.66 0.909657
Target:  5'- aGGGuAGGuGcGCCGCagcgGCUuuguGCCGAGACCg -3'
miRNA:   3'- cUCC-UCCuC-CGGCG----CGG----UGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 164267 0.66 0.909657
Target:  5'- cGAGGcgaaacuGGugcuGGCgGCGCCggguGCCAcgGCCa -3'
miRNA:   3'- -CUCCu------CCu---CCGgCGCGG----UGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 231451 0.66 0.909657
Target:  5'- gGGGGGGGGGGCauauaGUaGUCGCUuuuACCg -3'
miRNA:   3'- -CUCCUCCUCCGg----CG-CGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 179289 0.66 0.909657
Target:  5'- -------cGGCgGCGCCGCCAGAGCa -3'
miRNA:   3'- cuccuccuCCGgCGCGGUGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 56844 0.66 0.909657
Target:  5'- cGAaGA-GAGGCUGcCGCUACCAccGCCg -3'
miRNA:   3'- -CUcCUcCUCCGGC-GCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 136684 0.66 0.909657
Target:  5'- cGAGGAGacGAcgaccGGCCGguCGCCGCC---GCCg -3'
miRNA:   3'- -CUCCUC--CU-----CCGGC--GCGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 41518 0.66 0.909657
Target:  5'- uGAGGAuGGcAGcGCCgGCGCCAgCAGGAa- -3'
miRNA:   3'- -CUCCU-CC-UC-CGG-CGCGGUgGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 72979 0.66 0.907901
Target:  5'- gGAGuccGAGGAGuGCUGaccgccgcucccgcCGCCGCCAccGCCa -3'
miRNA:   3'- -CUC---CUCCUC-CGGC--------------GCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 188736 0.66 0.903727
Target:  5'- --cGAGGAGGCgGgGCUAacuCgGAAACCg -3'
miRNA:   3'- cucCUCCUCCGgCgCGGU---GgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 147250 0.66 0.903727
Target:  5'- --cGAGGcgcuGGCCGCGUCGCUGAugGACa -3'
miRNA:   3'- cucCUCCu---CCGGCGCGGUGGUU--UUGg -5'
30181 3' -57.6 NC_006273.1 + 83370 0.66 0.903727
Target:  5'- gGAGGAcccgcGGgccacgucGGGCUGCuGCCGCCGccACCc -3'
miRNA:   3'- -CUCCU-----CC--------UCCGGCG-CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 40945 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 1007 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 78675 0.66 0.901905
Target:  5'- cGAGaAGG-GGCCGggguccgcgggcacCGCCGCCGGAGgCg -3'
miRNA:   3'- -CUCcUCCuCCGGC--------------GCGGUGGUUUUgG- -5'
30181 3' -57.6 NC_006273.1 + 44723 0.67 0.89758
Target:  5'- -uGGAGGAcGCCGaaCCGCCG--GCCg -3'
miRNA:   3'- cuCCUCCUcCGGCgcGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 144122 0.67 0.893788
Target:  5'- cGAGGGucugcgcgacauuuuGGGucagcGGCa-CGCCGCCGAAGCCu -3'
miRNA:   3'- -CUCCU---------------CCU-----CCGgcGCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 99871 0.67 0.893149
Target:  5'- uGGGuuccaacAGGuGGCuaCGCGCCACCGGAuagagagcuucguauACCa -3'
miRNA:   3'- cUCC-------UCCuCCG--GCGCGGUGGUUU---------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.