miRNA display CGI


Results 41 - 60 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 30596 0.67 0.891218
Target:  5'- cGAGaccGGcGGCaccgGCGCCGCCAagAAACCg -3'
miRNA:   3'- -CUCcu-CCuCCGg---CGCGGUGGU--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 153766 0.67 0.891218
Target:  5'- uGGGAGcGcaAGGCCGCuucggccuCCGCCGcgGCCg -3'
miRNA:   3'- cUCCUC-C--UCCGGCGc-------GGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 162196 0.67 0.891218
Target:  5'- gGAGGcGGuGGuuGCGgCGCCGcgucuACCg -3'
miRNA:   3'- -CUCCuCCuCCggCGCgGUGGUuu---UGG- -5'
30181 3' -57.6 NC_006273.1 + 1711 0.67 0.8873
Target:  5'- cGAGGAGGcgacggcgcucggacGGgaGCUGCGCCGgCGguGGGCCg -3'
miRNA:   3'- -CUCCUCC---------------UC--CGGCGCGGUgGU--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 189550 0.67 0.884646
Target:  5'- --cGAGGAGcCCGaCGCCgaGCCAcAGCCa -3'
miRNA:   3'- cucCUCCUCcGGC-GCGG--UGGUuUUGG- -5'
30181 3' -57.6 NC_006273.1 + 54204 0.67 0.884646
Target:  5'- cGAGcGuucGGAGGCgGUGCCACaggcuguuGGCCa -3'
miRNA:   3'- -CUC-Cu--CCUCCGgCGCGGUGguu-----UUGG- -5'
30181 3' -57.6 NC_006273.1 + 66060 0.67 0.884646
Target:  5'- -uGGAGGAGauGCUGCGCUACguGGAa- -3'
miRNA:   3'- cuCCUCCUC--CGGCGCGGUGguUUUgg -5'
30181 3' -57.6 NC_006273.1 + 216156 0.67 0.883977
Target:  5'- -cGGGGGcGGCCGCuuucguccucgucGCUGCUAucGCCg -3'
miRNA:   3'- cuCCUCCuCCGGCG-------------CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 105283 0.67 0.877866
Target:  5'- cAGGcuGAGGUCGCGCgGCaggcAGGCCa -3'
miRNA:   3'- cUCCucCUCCGGCGCGgUGgu--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 105353 0.67 0.87159
Target:  5'- cGAGGAGGAugaagugaccgugauGUCGcCGUCACCcGAGCCc -3'
miRNA:   3'- -CUCCUCCUc--------------CGGC-GCGGUGGuUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 36950 0.67 0.870882
Target:  5'- -uGGAGGAGGCuaCGCGUgAa-AAGACCc -3'
miRNA:   3'- cuCCUCCUCCG--GCGCGgUggUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 140215 0.67 0.870882
Target:  5'- aGGGGAguGGGGGaCCaCGCCcaggGCCAgcAAGCCg -3'
miRNA:   3'- -CUCCU--CCUCC-GGcGCGG----UGGU--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 112969 0.67 0.870882
Target:  5'- uGGGAG--GGCCGCGauCCGCCGGAcuCCg -3'
miRNA:   3'- cUCCUCcuCCGGCGC--GGUGGUUUu-GG- -5'
30181 3' -57.6 NC_006273.1 + 213667 0.67 0.870882
Target:  5'- aGGGcGAGaAGaGCCGCGCCGacaAAGGCCu -3'
miRNA:   3'- -CUC-CUCcUC-CGGCGCGGUgg-UUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 24072 0.67 0.870882
Target:  5'- -uGGAuGAccuGGUuaucgucaCGCGCCACCGGGGCCa -3'
miRNA:   3'- cuCCUcCU---CCG--------GCGCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 6836 0.67 0.8637
Target:  5'- -uGGAcGGAaagGGUCGCGCCucaacguuccagACCAGAGCa -3'
miRNA:   3'- cuCCU-CCU---CCGGCGCGG------------UGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 140670 0.68 0.856324
Target:  5'- -uGGGGGAuccccGGUCGC-CCACCGcggaacGAGCCu -3'
miRNA:   3'- cuCCUCCU-----CCGGCGcGGUGGU------UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 187210 0.68 0.856324
Target:  5'- cGGGuGGcGGGCUGCGUCGCCuucgguGACg -3'
miRNA:   3'- cUCCuCC-UCCGGCGCGGUGGuu----UUGg -5'
30181 3' -57.6 NC_006273.1 + 96043 0.68 0.856324
Target:  5'- gGAGGAGGGGcgaGUCGCGggcaCCGCCucgguACCc -3'
miRNA:   3'- -CUCCUCCUC---CGGCGC----GGUGGuuu--UGG- -5'
30181 3' -57.6 NC_006273.1 + 135023 0.68 0.856324
Target:  5'- -cGGAacucaaccgacuGGGGGUCGCGCaCGCCAcuACg -3'
miRNA:   3'- cuCCU------------CCUCCGGCGCG-GUGGUuuUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.