miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 262 0.66 0.920859
Target:  5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3'
miRNA:   3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 1007 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 1711 0.67 0.8873
Target:  5'- cGAGGAGGcgacggcgcucggacGGgaGCUGCGCCGgCGguGGGCCg -3'
miRNA:   3'- -CUCCUCC---------------UC--CGGCGCGGUgGU--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 2393 0.69 0.764211
Target:  5'- uGGGGcGcGAGucggcGCC-CGCCGCCGAGGCCg -3'
miRNA:   3'- -CUCCuC-CUC-----CGGcGCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 5629 0.66 0.920859
Target:  5'- -cGGuGGGGG-CGUGCC-CCGcAGACCc -3'
miRNA:   3'- cuCCuCCUCCgGCGCGGuGGU-UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 6836 0.67 0.8637
Target:  5'- -uGGAcGGAaagGGUCGCGCCucaacguuccagACCAGAGCa -3'
miRNA:   3'- cuCCU-CCU---CCGGCGCGG------------UGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 17150 0.69 0.790198
Target:  5'- aGAGGAagacgaaGGAaacgacGGCCGCGCCauGCCGGucguCCg -3'
miRNA:   3'- -CUCCU-------CCU------CCGGCGCGG--UGGUUuu--GG- -5'
30181 3' -57.6 NC_006273.1 + 17379 0.73 0.569613
Target:  5'- aGAGGAGGGGaagacgcgguuGCCGCgcguaugGCCGCCG--GCCa -3'
miRNA:   3'- -CUCCUCCUC-----------CGGCG-------CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 17574 0.66 0.926128
Target:  5'- -cGGAcGGAGGCCGagGUUuCgGAAGCCg -3'
miRNA:   3'- cuCCU-CCUCCGGCg-CGGuGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 20498 0.66 0.909657
Target:  5'- aGGGuAGGuGcGCCGCagcgGCUuuguGCCGAGACCg -3'
miRNA:   3'- cUCC-UCCuC-CGGCG----CGG----UGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 20906 0.66 0.92032
Target:  5'- cGAGGaAGGuGGaCCGUgugaaucGCCGCCAAuGACg -3'
miRNA:   3'- -CUCC-UCCuCC-GGCG-------CGGUGGUU-UUGg -5'
30181 3' -57.6 NC_006273.1 + 21209 0.73 0.590115
Target:  5'- uGGGGGGuGGCCGgcUGCCGCCGcuguggcuGCCg -3'
miRNA:   3'- cUCCUCCuCCGGC--GCGGUGGUuu------UGG- -5'
30181 3' -57.6 NC_006273.1 + 24072 0.67 0.870882
Target:  5'- -uGGAuGAccuGGUuaucgucaCGCGCCACCGGGGCCa -3'
miRNA:   3'- cuCCUcCU---CCG--------GCGCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 30596 0.67 0.891218
Target:  5'- cGAGaccGGcGGCaccgGCGCCGCCAagAAACCg -3'
miRNA:   3'- -CUCcu-CCuCCGg---CGCGGUGGU--UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 31389 0.69 0.799775
Target:  5'- cGAGGucGGcaCCGCGCCACCGGAAg- -3'
miRNA:   3'- -CUCCucCUccGGCGCGGUGGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 31464 0.71 0.659017
Target:  5'- uGAGGcGGuGGCUGCGCCuCCucgucGGCCu -3'
miRNA:   3'- -CUCCuCCuCCGGCGCGGuGGuu---UUGG- -5'
30181 3' -57.6 NC_006273.1 + 34063 0.73 0.570585
Target:  5'- aGAGGAGu-GGUCGcCGCCGCCGuaguuACCg -3'
miRNA:   3'- -CUCCUCcuCCGGC-GCGGUGGUuu---UGG- -5'
30181 3' -57.6 NC_006273.1 + 36764 0.66 0.926128
Target:  5'- -cGGcGGGuGGCCugaGCaCGCCGAGGCCc -3'
miRNA:   3'- cuCC-UCCuCCGGcg-CG-GUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 36950 0.67 0.870882
Target:  5'- -uGGAGGAGGCuaCGCGUgAa-AAGACCc -3'
miRNA:   3'- cuCCUCCUCCG--GCGCGgUggUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 37266 0.78 0.329104
Target:  5'- cGAGGAGGAagacGCCGUgGCCGCCGAgcAGCCc -3'
miRNA:   3'- -CUCCUCCUc---CGGCG-CGGUGGUU--UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.