miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 39589 0.68 0.836281
Target:  5'- cGAGGggcGGGGGGCgcggcgacaugccguUGCGCUggGCCAugGCCg -3'
miRNA:   3'- -CUCC---UCCUCCG---------------GCGCGG--UGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 39860 0.66 0.926128
Target:  5'- cAGGAacccGGAGGaacaCGCGCaa-CAGGGCCg -3'
miRNA:   3'- cUCCU----CCUCCg---GCGCGgugGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 40200 0.66 0.920859
Target:  5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3'
miRNA:   3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 40398 0.68 0.838655
Target:  5'- gGAGGGGGAGGCCacagGCggcgcauucgauacGCUGCUuuuGGCCg -3'
miRNA:   3'- -CUCCUCCUCCGG----CG--------------CGGUGGuu-UUGG- -5'
30181 3' -57.6 NC_006273.1 + 40945 0.66 0.903727
Target:  5'- aGGGAcGGGGGuuGCGCCG--GGGACg -3'
miRNA:   3'- cUCCU-CCUCCggCGCGGUggUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 41518 0.66 0.909657
Target:  5'- uGAGGAuGGcAGcGCCgGCGCCAgCAGGAa- -3'
miRNA:   3'- -CUCCU-CC-UC-CGG-CGCGGUgGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 42716 0.68 0.824999
Target:  5'- cAGccGGccAGGCCGCGCCACaCGgcgacGAGCCg -3'
miRNA:   3'- cUCcuCC--UCCGGCGCGGUG-GU-----UUUGG- -5'
30181 3' -57.6 NC_006273.1 + 44275 0.71 0.668838
Target:  5'- aGGGAGGAuGGCCGU-CCGUCGAAGCUg -3'
miRNA:   3'- cUCCUCCU-CCGGCGcGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 44431 0.71 0.659017
Target:  5'- uGGGuAGGAGGgcaCCGUGCC-CCGAGGCg -3'
miRNA:   3'- cUCC-UCCUCC---GGCGCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 44723 0.67 0.89758
Target:  5'- -uGGAGGAcGCCGaaCCGCCG--GCCg -3'
miRNA:   3'- cuCCUCCUcCGGCgcGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 45890 0.76 0.398314
Target:  5'- cAGcGcGGcGGCCGgGCCGCCGAGGCCg -3'
miRNA:   3'- cUC-CuCCuCCGGCgCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 47566 0.68 0.824999
Target:  5'- aGAGGguugAGGGGGCCGUucCCGCgCGAGugCu -3'
miRNA:   3'- -CUCC----UCCUCCGGCGc-GGUG-GUUUugG- -5'
30181 3' -57.6 NC_006273.1 + 54204 0.67 0.884646
Target:  5'- cGAGcGuucGGAGGCgGUGCCACaggcuguuGGCCa -3'
miRNA:   3'- -CUC-Cu--CCUCCGgCGCGGUGguu-----UUGG- -5'
30181 3' -57.6 NC_006273.1 + 56642 0.66 0.926128
Target:  5'- -uGGAGGAaagaccguGGUCGUGaUCACCGccGCCg -3'
miRNA:   3'- cuCCUCCU--------CCGGCGC-GGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 56844 0.66 0.909657
Target:  5'- cGAaGA-GAGGCUGcCGCUACCAccGCCg -3'
miRNA:   3'- -CUcCUcCUCCGGC-GCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 57031 0.7 0.745744
Target:  5'- gGAGGAGGAGGCgucCGCGgC-CCGcGAGCg -3'
miRNA:   3'- -CUCCUCCUCCG---GCGCgGuGGU-UUUGg -5'
30181 3' -57.6 NC_006273.1 + 66060 0.67 0.884646
Target:  5'- -uGGAGGAGauGCUGCGCUACguGGAa- -3'
miRNA:   3'- cuCCUCCUC--CGGCGCGGUGguUUUgg -5'
30181 3' -57.6 NC_006273.1 + 68030 0.73 0.538734
Target:  5'- gGAGGAcugccggcagguguGGGcucGGCCaGCGCCGCCGugGCCg -3'
miRNA:   3'- -CUCCU--------------CCU---CCGG-CGCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 71636 0.7 0.758714
Target:  5'- aGAGGAGGAagacgacgacgaugcGGCC-UGCCGCCGGcuguuucuACCa -3'
miRNA:   3'- -CUCCUCCU---------------CCGGcGCGGUGGUUu-------UGG- -5'
30181 3' -57.6 NC_006273.1 + 71642 0.69 0.799775
Target:  5'- gGAGGAcgaGGAGGaCGuCGCUGCUAAAccGCCg -3'
miRNA:   3'- -CUCCU---CCUCCgGC-GCGGUGGUUU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.