miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 235093 0.66 0.920859
Target:  5'- aGGGAGGAGuCgCGgGCC-CCGGGGCa -3'
miRNA:   3'- cUCCUCCUCcG-GCgCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 234752 0.66 0.926128
Target:  5'- cAGGAacccGGAGGaacaCGCGCaa-CAGGGCCg -3'
miRNA:   3'- cUCCU----CCUCCg---GCGCGgugGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 234482 0.68 0.836281
Target:  5'- cGAGGggcGGGGGGCgcggcgacaugccguUGCGCUggGCCAugGCCg -3'
miRNA:   3'- -CUCC---UCCUCCG---------------GCGCGG--UGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 231451 0.66 0.909657
Target:  5'- gGGGGGGGGGGCauauaGUaGUCGCUuuuACCg -3'
miRNA:   3'- -CUCCUCCUCCGg----CG-CGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 220818 0.71 0.668838
Target:  5'- cAGGAGGAGG-CGCGaUCGCCAGGGa- -3'
miRNA:   3'- cUCCUCCUCCgGCGC-GGUGGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 217704 0.69 0.764211
Target:  5'- cAGGGGGuGGGaCGCGCCGCCu--ACa -3'
miRNA:   3'- cUCCUCC-UCCgGCGCGGUGGuuuUGg -5'
30181 3' -57.6 NC_006273.1 + 216156 0.67 0.883977
Target:  5'- -cGGGGGcGGCCGCuuucguccucgucGCUGCUAucGCCg -3'
miRNA:   3'- cuCCUCCuCCGGCG-------------CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 213968 0.73 0.560878
Target:  5'- cGAGGAcGGAGG-CGCGCaGCCAu-ACCg -3'
miRNA:   3'- -CUCCU-CCUCCgGCGCGgUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 213667 0.67 0.870882
Target:  5'- aGGGcGAGaAGaGCCGCGCCGacaAAGGCCu -3'
miRNA:   3'- -CUC-CUCcUC-CGGCGCGGUgg-UUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 213366 0.69 0.764211
Target:  5'- cAGaGGGAGGUCaGgGCCACCGAucCCg -3'
miRNA:   3'- cUCcUCCUCCGG-CgCGGUGGUUuuGG- -5'
30181 3' -57.6 NC_006273.1 + 212050 0.66 0.920859
Target:  5'- cGAGGGucgcGGGGGUgGgGgCGCCcAGGCCg -3'
miRNA:   3'- -CUCCU----CCUCCGgCgCgGUGGuUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 211711 0.7 0.745744
Target:  5'- aGAGGAGGAGcaggcGCUG-GCCACgAucACCg -3'
miRNA:   3'- -CUCCUCCUC-----CGGCgCGGUGgUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 207348 0.75 0.467141
Target:  5'- gGAGaGGGaAGGUCGCGCCGCCGcAGCa -3'
miRNA:   3'- -CUCcUCC-UCCGGCGCGGUGGUuUUGg -5'
30181 3' -57.6 NC_006273.1 + 207146 0.66 0.915368
Target:  5'- cAGGuAGGGGGUugucaCGCGCCACgGuauGAGCa -3'
miRNA:   3'- cUCC-UCCUCCG-----GCGCGGUGgU---UUUGg -5'
30181 3' -57.6 NC_006273.1 + 203921 0.68 0.84876
Target:  5'- cGAcGAGGAGG-CGCaGCCACC---GCCu -3'
miRNA:   3'- -CUcCUCCUCCgGCG-CGGUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 202238 0.75 0.485295
Target:  5'- cGAGGucGGAGGUCaCGCCACaUGAAGCCg -3'
miRNA:   3'- -CUCCu-CCUCCGGcGCGGUG-GUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 202198 0.68 0.816744
Target:  5'- -cGGAGGAGGCUuuCGCCACaccuauCCu -3'
miRNA:   3'- cuCCUCCUCCGGc-GCGGUGguuuu-GG- -5'
30181 3' -57.6 NC_006273.1 + 200635 0.69 0.782243
Target:  5'- ---cAGGAGGCUGUGCgCGCCG--GCCu -3'
miRNA:   3'- cuccUCCUCCGGCGCG-GUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 198014 0.69 0.773286
Target:  5'- gGAGGAcGGGGUggagCGgGUCGCCGAGACUa -3'
miRNA:   3'- -CUCCUcCUCCG----GCgCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 197286 0.69 0.764211
Target:  5'- uGGGGcGcGAGucggcGCC-CGCCGCCGAGGCCg -3'
miRNA:   3'- -CUCCuC-CUC-----CGGcGCGGUGGUUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.