miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 164543 0.71 0.707767
Target:  5'- aGGGAGGGcGGCgGCGgucggcCCGCCAGcguGCCg -3'
miRNA:   3'- cUCCUCCU-CCGgCGC------GGUGGUUu--UGG- -5'
30181 3' -57.6 NC_006273.1 + 73753 0.72 0.609758
Target:  5'- -cGGccGAGGCCcggcagcgGCGCCGCCAGcggcGACCa -3'
miRNA:   3'- cuCCucCUCCGG--------CGCGGUGGUU----UUGG- -5'
30181 3' -57.6 NC_006273.1 + 154549 0.72 0.619607
Target:  5'- aAGGAGGc-GCUGCGCC-CCGcgGCCg -3'
miRNA:   3'- cUCCUCCucCGGCGCGGuGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 141883 0.72 0.619607
Target:  5'- cGAGGccGGcGGCgGCGUCACCAcuuuGACCa -3'
miRNA:   3'- -CUCCu-CCuCCGgCGCGGUGGUu---UUGG- -5'
30181 3' -57.6 NC_006273.1 + 129224 0.72 0.638336
Target:  5'- uGAGGucguGGAacuugauGGCgUGCGCCGCCGcgGCCa -3'
miRNA:   3'- -CUCCu---CCU-------CCG-GCGCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 111323 0.72 0.646221
Target:  5'- aGGGGAGGccuggccgcauagcGcGGCCGCGCCGCUggGuUCa -3'
miRNA:   3'- -CUCCUCC--------------U-CCGGCGCGGUGGuuUuGG- -5'
30181 3' -57.6 NC_006273.1 + 139924 0.71 0.662948
Target:  5'- --cGAGGAGGCCGUaaauauggcgcugguGgCCugCGAGGCCg -3'
miRNA:   3'- cucCUCCUCCGGCG---------------C-GGugGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 95504 0.71 0.668838
Target:  5'- cGGGGAGGGucccGGCaCGgGCCGagGAGACCa -3'
miRNA:   3'- -CUCCUCCU----CCG-GCgCGGUggUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 104337 0.71 0.688389
Target:  5'- aGAGGGGGAugGGCuggCGCGCgGCCAGguAGCg -3'
miRNA:   3'- -CUCCUCCU--CCG---GCGCGgUGGUU--UUGg -5'
30181 3' -57.6 NC_006273.1 + 21209 0.73 0.590115
Target:  5'- uGGGGGGuGGCCGgcUGCCGCCGcuguggcuGCCg -3'
miRNA:   3'- cUCCUCCuCCGGC--GCGGUGGUuu------UGG- -5'
30181 3' -57.6 NC_006273.1 + 34063 0.73 0.570585
Target:  5'- aGAGGAGu-GGUCGcCGCCGCCGuaguuACCg -3'
miRNA:   3'- -CUCCUCcuCCGGC-GCGGUGGUuu---UGG- -5'
30181 3' -57.6 NC_006273.1 + 213968 0.73 0.560878
Target:  5'- cGAGGAcGGAGG-CGCGCaGCCAu-ACCg -3'
miRNA:   3'- -CUCCU-CCUCCgGCGCGgUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 37266 0.78 0.329104
Target:  5'- cGAGGAGGAagacGCCGUgGCCGCCGAgcAGCCc -3'
miRNA:   3'- -CUCCUCCUc---CGGCG-CGGUGGUU--UUGG- -5'
30181 3' -57.6 NC_006273.1 + 45890 0.76 0.398314
Target:  5'- cAGcGcGGcGGCCGgGCCGCCGAGGCCg -3'
miRNA:   3'- cUC-CuCCuCCGGCgCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 163910 0.76 0.423369
Target:  5'- cAGcGAGGAGGCUGCGaUCGCCGccGCCu -3'
miRNA:   3'- cUC-CUCCUCCGGCGC-GGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 79045 0.75 0.449344
Target:  5'- cAGGcu-GGGCCcacGCGCCACCAGAGCCu -3'
miRNA:   3'- cUCCuccUCCGG---CGCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 101245 0.75 0.458196
Target:  5'- aGAGGAGGAcGCCcuaugucCGCCACgGAAGCCc -3'
miRNA:   3'- -CUCCUCCUcCGGc------GCGGUGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 169182 0.73 0.541606
Target:  5'- -uGGcAGGAGGUCGCGUCACCucuugugacGCCu -3'
miRNA:   3'- cuCC-UCCUCCGGCGCGGUGGuuu------UGG- -5'
30181 3' -57.6 NC_006273.1 + 99170 0.73 0.560878
Target:  5'- aAGGAGGGGGCCGUcauuaACgGAAACCg -3'
miRNA:   3'- cUCCUCCUCCGGCGcgg--UGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 135120 0.73 0.560878
Target:  5'- cGAGGAGucAGGcCCGCGCCGCUuGGAACUg -3'
miRNA:   3'- -CUCCUCc-UCC-GGCGCGGUGG-UUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.