miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30181 3' -57.6 NC_006273.1 + 117224 0.76 0.390176
Target:  5'- uGGGGAGGAagaGGCCGCagaggggagaGCCGCCGAAAgUa -3'
miRNA:   3'- -CUCCUCCU---CCGGCG----------CGGUGGUUUUgG- -5'
30181 3' -57.6 NC_006273.1 + 44431 0.71 0.659017
Target:  5'- uGGGuAGGAGGgcaCCGUGCC-CCGAGGCg -3'
miRNA:   3'- cUCC-UCCUCC---GGCGCGGuGGUUUUGg -5'
30181 3' -57.6 NC_006273.1 + 220818 0.71 0.668838
Target:  5'- cAGGAGGAGG-CGCGaUCGCCAGGGa- -3'
miRNA:   3'- cUCCUCCUCCgGCGC-GGUGGUUUUgg -5'
30181 3' -57.6 NC_006273.1 + 72598 0.66 0.926128
Target:  5'- -cGGcAGcGAcaugcGGCCGCuGCCGCCGccACCa -3'
miRNA:   3'- cuCC-UC-CU-----CCGGCG-CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 207348 0.75 0.467141
Target:  5'- gGAGaGGGaAGGUCGCGCCGCCGcAGCa -3'
miRNA:   3'- -CUCcUCC-UCCGGCGCGGUGGUuUUGg -5'
30181 3' -57.6 NC_006273.1 + 202238 0.75 0.485295
Target:  5'- cGAGGucGGAGGUCaCGCCACaUGAAGCCg -3'
miRNA:   3'- -CUCCu-CCUCCGGcGCGGUG-GUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 157423 0.74 0.513134
Target:  5'- cGAGGAGGAggGGCCGCaGCCGuuggUgGAAACUa -3'
miRNA:   3'- -CUCCUCCU--CCGGCG-CGGU----GgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 68030 0.73 0.538734
Target:  5'- gGAGGAcugccggcagguguGGGcucGGCCaGCGCCGCCGugGCCg -3'
miRNA:   3'- -CUCCU--------------CCU---CCGG-CGCGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 72158 0.73 0.590115
Target:  5'- --cGAGGAGGCUgagGCGCCGCgGAuuCCu -3'
miRNA:   3'- cucCUCCUCCGG---CGCGGUGgUUuuGG- -5'
30181 3' -57.6 NC_006273.1 + 140994 0.72 0.649176
Target:  5'- -cGGAGcGGGCCGCGCCcgguGCCc-GGCCc -3'
miRNA:   3'- cuCCUCcUCCGGCGCGG----UGGuuUUGG- -5'
30181 3' -57.6 NC_006273.1 + 157011 0.72 0.599926
Target:  5'- aGAGGAGGAGaGCCG-GCaaagaagagggCGCgGAAACCa -3'
miRNA:   3'- -CUCCUCCUC-CGGCgCG-----------GUGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 17379 0.73 0.569613
Target:  5'- aGAGGAGGGGaagacgcgguuGCCGCgcguaugGCCGCCG--GCCa -3'
miRNA:   3'- -CUCCUCCUC-----------CGGCG-------CGGUGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 148002 0.76 0.423369
Target:  5'- -uGGAGGAGGuuGCGCCGC--AAGCg -3'
miRNA:   3'- cuCCUCCUCCggCGCGGUGguUUUGg -5'
30181 3' -57.6 NC_006273.1 + 183572 0.72 0.619607
Target:  5'- -cGGAGG-GGCCGCGC-ACUuuuGCCa -3'
miRNA:   3'- cuCCUCCuCCGGCGCGgUGGuuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 172197 0.76 0.431928
Target:  5'- gGAGGcaaaGGcGAGGCCGCGCCgGCCGc-GCCg -3'
miRNA:   3'- -CUCC----UC-CUCCGGCGCGG-UGGUuuUGG- -5'
30181 3' -57.6 NC_006273.1 + 109554 0.73 0.560878
Target:  5'- ----cGGAGGCC--GCCACCAAGGCCa -3'
miRNA:   3'- cuccuCCUCCGGcgCGGUGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 193650 0.72 0.629463
Target:  5'- uGGGAcGuGAGGCCGC-UCACgGAGACCa -3'
miRNA:   3'- cUCCU-C-CUCCGGCGcGGUGgUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 31464 0.71 0.659017
Target:  5'- uGAGGcGGuGGCUGCGCCuCCucgucGGCCu -3'
miRNA:   3'- -CUCCuCCuCCGGCGCGGuGGuu---UUGG- -5'
30181 3' -57.6 NC_006273.1 + 182618 0.76 0.431928
Target:  5'- -uGGAcuuGGuGGCCGCGUCuugGCCGAGGCCg -3'
miRNA:   3'- cuCCU---CCuCCGGCGCGG---UGGUUUUGG- -5'
30181 3' -57.6 NC_006273.1 + 72910 0.74 0.513134
Target:  5'- gGAGGAgGGAGGCgGcCGCCGCUccuucuGCCg -3'
miRNA:   3'- -CUCCU-CCUCCGgC-GCGGUGGuuu---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.