miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30182 5' -50.1 NC_006273.1 + 28786 0.66 0.998701
Target:  5'- -cGGCC-CCCAUcuGGUAuccaaacuACGCCgggGCCc -3'
miRNA:   3'- auCUGGaGGGUA--UCAUu-------UGCGGa--UGG- -5'
30182 5' -50.1 NC_006273.1 + 35713 0.73 0.926394
Target:  5'- uUGGACCUCCaugGGUcccuuGAucCGCCUGCCc -3'
miRNA:   3'- -AUCUGGAGGguaUCA-----UUu-GCGGAUGG- -5'
30182 5' -50.1 NC_006273.1 + 41837 0.66 0.998927
Target:  5'- aGGGCUUCCU----UGAACGCCgugcACCa -3'
miRNA:   3'- aUCUGGAGGGuaucAUUUGCGGa---UGG- -5'
30182 5' -50.1 NC_006273.1 + 66355 0.66 0.999415
Target:  5'- --cACUUCCCcUAGUAAuaccaccgucACGUCUACUa -3'
miRNA:   3'- aucUGGAGGGuAUCAUU----------UGCGGAUGG- -5'
30182 5' -50.1 NC_006273.1 + 66844 0.68 0.995638
Target:  5'- -cGGCCUgcagcuaCCCGaAGUGcgcAGCGCCUACa -3'
miRNA:   3'- auCUGGA-------GGGUaUCAU---UUGCGGAUGg -5'
30182 5' -50.1 NC_006273.1 + 68202 0.66 0.999279
Target:  5'- -cGGCCUCCgCGgccgcuGCGCCcGCCg -3'
miRNA:   3'- auCUGGAGG-GUaucauuUGCGGaUGG- -5'
30182 5' -50.1 NC_006273.1 + 72721 0.66 0.999118
Target:  5'- --cGCCUCCCGgagGGgagGAGaGCCUACa -3'
miRNA:   3'- aucUGGAGGGUa--UCa--UUUgCGGAUGg -5'
30182 5' -50.1 NC_006273.1 + 85365 0.67 0.998024
Target:  5'- cAGACCUCCacgcaagccgugagCAUGGcAAAgGCCUuguCCa -3'
miRNA:   3'- aUCUGGAGG--------------GUAUCaUUUgCGGAu--GG- -5'
30182 5' -50.1 NC_006273.1 + 85640 0.67 0.998126
Target:  5'- gAGACCUUCUgcaGGUAGGCGCgUUugCg -3'
miRNA:   3'- aUCUGGAGGGua-UCAUUUGCG-GAugG- -5'
30182 5' -50.1 NC_006273.1 + 90282 0.67 0.998126
Target:  5'- cGGGCUgCCCcgcagGUGGUGAucaGCGCCgccGCCa -3'
miRNA:   3'- aUCUGGaGGG-----UAUCAUU---UGCGGa--UGG- -5'
30182 5' -50.1 NC_006273.1 + 91117 0.67 0.996874
Target:  5'- -cGACCUgCCgAUAGuUGGGCGCCaaauCCa -3'
miRNA:   3'- auCUGGA-GGgUAUC-AUUUGCGGau--GG- -5'
30182 5' -50.1 NC_006273.1 + 95205 0.69 0.989929
Target:  5'- -cGGCCgCCCAgccggGGUcgGCGCCUcggACCc -3'
miRNA:   3'- auCUGGaGGGUa----UCAuuUGCGGA---UGG- -5'
30182 5' -50.1 NC_006273.1 + 101161 0.72 0.954612
Target:  5'- aAGGCCUCgggcacgggCGUGgcggccGUAGGCGCCUACCg -3'
miRNA:   3'- aUCUGGAGg--------GUAU------CAUUUGCGGAUGG- -5'
30182 5' -50.1 NC_006273.1 + 118290 0.74 0.896107
Target:  5'- cAGGCCgg-CGUGGUGAACGCCaguUGCCg -3'
miRNA:   3'- aUCUGGaggGUAUCAUUUGCGG---AUGG- -5'
30182 5' -50.1 NC_006273.1 + 121718 0.75 0.867579
Target:  5'- cAGGCCagUCCCGagaccGUGAgacGCGCCUGCCa -3'
miRNA:   3'- aUCUGG--AGGGUau---CAUU---UGCGGAUGG- -5'
30182 5' -50.1 NC_006273.1 + 123712 0.71 0.971651
Target:  5'- aAGGCCUCCCAacaggcGGuUGAGCGCC-ACa -3'
miRNA:   3'- aUCUGGAGGGUa-----UC-AUUUGCGGaUGg -5'
30182 5' -50.1 NC_006273.1 + 123771 0.66 0.998927
Target:  5'- gUAGAUgUCCa--GGUGcuuGCGCUUACCg -3'
miRNA:   3'- -AUCUGgAGGguaUCAUu--UGCGGAUGG- -5'
30182 5' -50.1 NC_006273.1 + 148665 0.76 0.809488
Target:  5'- aGGugCUCUCGUGGU--GCGgCCUGCCc -3'
miRNA:   3'- aUCugGAGGGUAUCAuuUGC-GGAUGG- -5'
30182 5' -50.1 NC_006273.1 + 152033 0.66 0.999415
Target:  5'- gGGuCCUCCCAccac-GGCGCC-GCCg -3'
miRNA:   3'- aUCuGGAGGGUaucauUUGCGGaUGG- -5'
30182 5' -50.1 NC_006273.1 + 164354 0.68 0.994998
Target:  5'- --aGCCUCCggaucaCAUGGUuacucAGCGUCUGCCa -3'
miRNA:   3'- aucUGGAGG------GUAUCAu----UUGCGGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.