Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30182 | 5' | -50.1 | NC_006273.1 | + | 174901 | 1.12 | 0.009777 |
Target: 5'- aUAGACCUCCCAUAGUAAACGCCUACCg -3' miRNA: 3'- -AUCUGGAGGGUAUCAUUUGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 152033 | 0.66 | 0.999415 |
Target: 5'- gGGuCCUCCCAccac-GGCGCC-GCCg -3' miRNA: 3'- aUCuGGAGGGUaucauUUGCGGaUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 218321 | 0.66 | 0.999279 |
Target: 5'- --cGCCUgCCAgaUGGUAAACGCgUcCCa -3' miRNA: 3'- aucUGGAgGGU--AUCAUUUGCGgAuGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 220265 | 0.66 | 0.999118 |
Target: 5'- cGGACgUCCCGUc----ACGCCUAgCa -3' miRNA: 3'- aUCUGgAGGGUAucauuUGCGGAUgG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 167734 | 0.66 | 0.999118 |
Target: 5'- -cGAUCUUgaCGUGGUuAACGuCCUGCCc -3' miRNA: 3'- auCUGGAGg-GUAUCAuUUGC-GGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 221812 | 0.66 | 0.999118 |
Target: 5'- cGGGCCgCCCGgcgGGUGAgcacccggcguuGCGCCgUAUCu -3' miRNA: 3'- aUCUGGaGGGUa--UCAUU------------UGCGG-AUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 189025 | 0.66 | 0.998927 |
Target: 5'- gGGGCCUgugcgacgacagCCgCGUGGUGGGgGCCcggACCg -3' miRNA: 3'- aUCUGGA------------GG-GUAUCAUUUgCGGa--UGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 85640 | 0.67 | 0.998126 |
Target: 5'- gAGACCUUCUgcaGGUAGGCGCgUUugCg -3' miRNA: 3'- aUCUGGAGGGua-UCAUUUGCG-GAugG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 66844 | 0.68 | 0.995638 |
Target: 5'- -cGGCCUgcagcuaCCCGaAGUGcgcAGCGCCUACa -3' miRNA: 3'- auCUGGA-------GGGUaUCAU---UUGCGGAUGg -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 164354 | 0.68 | 0.994998 |
Target: 5'- --aGCCUCCggaucaCAUGGUuacucAGCGUCUGCCa -3' miRNA: 3'- aucUGGAGG------GUAUCAu----UUGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 95205 | 0.69 | 0.989929 |
Target: 5'- -cGGCCgCCCAgccggGGUcgGCGCCUcggACCc -3' miRNA: 3'- auCUGGaGGGUa----UCAuuUGCGGA---UGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 118290 | 0.74 | 0.896107 |
Target: 5'- cAGGCCgg-CGUGGUGAACGCCaguUGCCg -3' miRNA: 3'- aUCUGGaggGUAUCAUUUGCGG---AUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 121718 | 0.75 | 0.867579 |
Target: 5'- cAGGCCagUCCCGagaccGUGAgacGCGCCUGCCa -3' miRNA: 3'- aUCUGG--AGGGUau---CAUU---UGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 148665 | 0.76 | 0.809488 |
Target: 5'- aGGugCUCUCGUGGU--GCGgCCUGCCc -3' miRNA: 3'- aUCugGAGGGUAUCAuuUGC-GGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 233095 | 0.67 | 0.99677 |
Target: 5'- gUAGAUCUCCCuaccc---CGUCUACCa -3' miRNA: 3'- -AUCUGGAGGGuaucauuuGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 206422 | 0.69 | 0.991176 |
Target: 5'- gAGGCCUCCUA----AGACGUCgcgACCg -3' miRNA: 3'- aUCUGGAGGGUaucaUUUGCGGa--UGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 123712 | 0.71 | 0.971651 |
Target: 5'- aAGGCCUCCCAacaggcGGuUGAGCGCC-ACa -3' miRNA: 3'- aUCUGGAGGGUa-----UC-AUUUGCGGaUGg -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 101161 | 0.72 | 0.954612 |
Target: 5'- aAGGCCUCgggcacgggCGUGgcggccGUAGGCGCCUACCg -3' miRNA: 3'- aUCUGGAGg--------GUAU------CAUUUGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 35713 | 0.73 | 0.926394 |
Target: 5'- uUGGACCUCCaugGGUcccuuGAucCGCCUGCCc -3' miRNA: 3'- -AUCUGGAGGguaUCA-----UUu-GCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 179242 | 0.66 | 0.999415 |
Target: 5'- -cGACCUCCgCGUcGGUcgcCGCCU-CCg -3' miRNA: 3'- auCUGGAGG-GUA-UCAuuuGCGGAuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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