Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30182 | 5' | -50.1 | NC_006273.1 | + | 66355 | 0.66 | 0.999415 |
Target: 5'- --cACUUCCCcUAGUAAuaccaccgucACGUCUACUa -3' miRNA: 3'- aucUGGAGGGuAUCAUU----------UGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 90282 | 0.67 | 0.998126 |
Target: 5'- cGGGCUgCCCcgcagGUGGUGAucaGCGCCgccGCCa -3' miRNA: 3'- aUCUGGaGGG-----UAUCAUU---UGCGGa--UGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 85365 | 0.67 | 0.998024 |
Target: 5'- cAGACCUCCacgcaagccgugagCAUGGcAAAgGCCUuguCCa -3' miRNA: 3'- aUCUGGAGG--------------GUAUCaUUUgCGGAu--GG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 166347 | 0.67 | 0.997351 |
Target: 5'- cAGGgCUCCCucguUGGagAGACGUgUACCg -3' miRNA: 3'- aUCUgGAGGGu---AUCa-UUUGCGgAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 91117 | 0.67 | 0.996874 |
Target: 5'- -cGACCUgCCgAUAGuUGGGCGCCaaauCCa -3' miRNA: 3'- auCUGGA-GGgUAUC-AUUUGCGGau--GG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 233095 | 0.67 | 0.99677 |
Target: 5'- gUAGAUCUCCCuaccc---CGUCUACCa -3' miRNA: 3'- -AUCUGGAGGGuaucauuuGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 206422 | 0.69 | 0.991176 |
Target: 5'- gAGGCCUCCUA----AGACGUCgcgACCg -3' miRNA: 3'- aUCUGGAGGGUaucaUUUGCGGa--UGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 123712 | 0.71 | 0.971651 |
Target: 5'- aAGGCCUCCCAacaggcGGuUGAGCGCC-ACa -3' miRNA: 3'- aUCUGGAGGGUa-----UC-AUUUGCGGaUGg -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 101161 | 0.72 | 0.954612 |
Target: 5'- aAGGCCUCgggcacgggCGUGgcggccGUAGGCGCCUACCg -3' miRNA: 3'- aUCUGGAGg--------GUAU------CAUUUGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 35713 | 0.73 | 0.926394 |
Target: 5'- uUGGACCUCCaugGGUcccuuGAucCGCCUGCCc -3' miRNA: 3'- -AUCUGGAGGguaUCA-----UUu-GCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 170998 | 0.8 | 0.60968 |
Target: 5'- aGGACCUCCgGUAcgGAcgucGCGCCUGCCg -3' miRNA: 3'- aUCUGGAGGgUAUcaUU----UGCGGAUGG- -5' |
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30182 | 5' | -50.1 | NC_006273.1 | + | 179242 | 0.66 | 0.999415 |
Target: 5'- -cGACCUCCgCGUcGGUcgcCGCCU-CCg -3' miRNA: 3'- auCUGGAGG-GUA-UCAuuuGCGGAuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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