miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 3' -49.8 NC_006273.1 + 230350 0.66 0.999399
Target:  5'- ---cCCcuUUUCGUCACACACGUCUu -3'
miRNA:   3'- gagaGGucGAAGUAGUGUGUGUAGAc -5'
30183 3' -49.8 NC_006273.1 + 65764 0.66 0.999163
Target:  5'- gUCUCCAGCagcUCAUCAUccaugccgucaaucaGCGCucguGUCUGc -3'
miRNA:   3'- gAGAGGUCGa--AGUAGUG---------------UGUG----UAGAC- -5'
30183 3' -49.8 NC_006273.1 + 201769 0.67 0.998071
Target:  5'- gUUUCCAGCUaUCAUCu---GCAUCUGu -3'
miRNA:   3'- gAGAGGUCGA-AGUAGugugUGUAGAC- -5'
30183 3' -49.8 NC_006273.1 + 140891 0.67 0.997701
Target:  5'- cCUggCCGGCcUCGUCGCGCACcuGUUUGu -3'
miRNA:   3'- -GAgaGGUCGaAGUAGUGUGUG--UAGAC- -5'
30183 3' -49.8 NC_006273.1 + 181485 0.67 0.997273
Target:  5'- -cCUCCAGCaacaccgUCGUCGCGuucuCGCAUCa- -3'
miRNA:   3'- gaGAGGUCGa------AGUAGUGU----GUGUAGac -5'
30183 3' -49.8 NC_006273.1 + 19847 0.69 0.990911
Target:  5'- uUUUCCAGCgugCGUCugACGCuGUCUu -3'
miRNA:   3'- gAGAGGUCGaa-GUAGugUGUG-UAGAc -5'
30183 3' -49.8 NC_006273.1 + 7949 0.69 0.988206
Target:  5'- uCUCUCCAGUUUCcUCAuCAC-CGUCc- -3'
miRNA:   3'- -GAGAGGUCGAAGuAGU-GUGuGUAGac -5'
30183 3' -49.8 NC_006273.1 + 128801 0.7 0.982832
Target:  5'- -cUUCCAGUUUCAUCgucaaacaaugccACACGCAgCUGg -3'
miRNA:   3'- gaGAGGUCGAAGUAG-------------UGUGUGUaGAC- -5'
30183 3' -49.8 NC_006273.1 + 153587 0.73 0.940042
Target:  5'- gUCUUCGGCUUCGUCAgcaaGCACGUgccgCUGg -3'
miRNA:   3'- gAGAGGUCGAAGUAGUg---UGUGUA----GAC- -5'
30183 3' -49.8 NC_006273.1 + 29369 0.75 0.879509
Target:  5'- aUCUCCcacccggauguAGCggUCGUCGCGCACGUCg- -3'
miRNA:   3'- gAGAGG-----------UCGa-AGUAGUGUGUGUAGac -5'
30183 3' -49.8 NC_006273.1 + 227515 0.78 0.748415
Target:  5'- ---aCCAGCUUCGUCACGcCACGUCa- -3'
miRNA:   3'- gagaGGUCGAAGUAGUGU-GUGUAGac -5'
30183 3' -49.8 NC_006273.1 + 176918 1.1 0.014326
Target:  5'- gCUCUCCAGCUUCAUCACACACAUCUGa -3'
miRNA:   3'- -GAGAGGUCGAAGUAGUGUGUGUAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.