Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 7949 | 0.69 | 0.988206 |
Target: 5'- uCUCUCCAGUUUCcUCAuCAC-CGUCc- -3' miRNA: 3'- -GAGAGGUCGAAGuAGU-GUGuGUAGac -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 19847 | 0.69 | 0.990911 |
Target: 5'- uUUUCCAGCgugCGUCugACGCuGUCUu -3' miRNA: 3'- gAGAGGUCGaa-GUAGugUGUG-UAGAc -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 29369 | 0.75 | 0.879509 |
Target: 5'- aUCUCCcacccggauguAGCggUCGUCGCGCACGUCg- -3' miRNA: 3'- gAGAGG-----------UCGa-AGUAGUGUGUGUAGac -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 65764 | 0.66 | 0.999163 |
Target: 5'- gUCUCCAGCagcUCAUCAUccaugccgucaaucaGCGCucguGUCUGc -3' miRNA: 3'- gAGAGGUCGa--AGUAGUG---------------UGUG----UAGAC- -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 128801 | 0.7 | 0.982832 |
Target: 5'- -cUUCCAGUUUCAUCgucaaacaaugccACACGCAgCUGg -3' miRNA: 3'- gaGAGGUCGAAGUAG-------------UGUGUGUaGAC- -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 140891 | 0.67 | 0.997701 |
Target: 5'- cCUggCCGGCcUCGUCGCGCACcuGUUUGu -3' miRNA: 3'- -GAgaGGUCGaAGUAGUGUGUG--UAGAC- -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 153587 | 0.73 | 0.940042 |
Target: 5'- gUCUUCGGCUUCGUCAgcaaGCACGUgccgCUGg -3' miRNA: 3'- gAGAGGUCGAAGUAGUg---UGUGUA----GAC- -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 176918 | 1.1 | 0.014326 |
Target: 5'- gCUCUCCAGCUUCAUCACACACAUCUGa -3' miRNA: 3'- -GAGAGGUCGAAGUAGUGUGUGUAGAC- -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 181485 | 0.67 | 0.997273 |
Target: 5'- -cCUCCAGCaacaccgUCGUCGCGuucuCGCAUCa- -3' miRNA: 3'- gaGAGGUCGa------AGUAGUGU----GUGUAGac -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 201769 | 0.67 | 0.998071 |
Target: 5'- gUUUCCAGCUaUCAUCu---GCAUCUGu -3' miRNA: 3'- gAGAGGUCGA-AGUAGugugUGUAGAC- -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 227515 | 0.78 | 0.748415 |
Target: 5'- ---aCCAGCUUCGUCACGcCACGUCa- -3' miRNA: 3'- gagaGGUCGAAGUAGUGU-GUGUAGac -5' |
|||||||
30183 | 3' | -49.8 | NC_006273.1 | + | 230350 | 0.66 | 0.999399 |
Target: 5'- ---cCCcuUUUCGUCACACACGUCUu -3' miRNA: 3'- gagaGGucGAAGUAGUGUGUGUAGAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home