miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 120590 0.66 0.999164
Target:  5'- uUGCCggUGgcGGCGACGuuuggguuGCGcAGCg -3'
miRNA:   3'- -ACGGuaGCaaCUGCUGCuu------CGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 151991 0.66 0.999164
Target:  5'- cGCCGggcCGggUGGCGGCGGcAGCagcccgacGUGGCc -3'
miRNA:   3'- aCGGUa--GCa-ACUGCUGCU-UCG--------CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 118831 0.66 0.999164
Target:  5'- gUGUCGUCGUgguUGAUGuuGA-GCGggAGCg -3'
miRNA:   3'- -ACGGUAGCA---ACUGCugCUuCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 164250 0.66 0.999164
Target:  5'- aGCac-CGUgauaGGCGGCGAGGCGaaacuggugcUGGCg -3'
miRNA:   3'- aCGguaGCAa---CUGCUGCUUCGC----------AUCG- -5'
30183 5' -50.9 NC_006273.1 + 68520 0.66 0.999164
Target:  5'- cUGCCGUaccUGuCGGCGGAGCGcacGGUg -3'
miRNA:   3'- -ACGGUAgcaACuGCUGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 14008 0.66 0.999164
Target:  5'- gGCgGgcgCGggGugG-CGGAGCGgggAGCg -3'
miRNA:   3'- aCGgUa--GCaaCugCuGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 186603 0.66 0.999164
Target:  5'- cGCUGUgcacCGaUGACGugGAGGUGUucGCc -3'
miRNA:   3'- aCGGUA----GCaACUGCugCUUCGCAu-CG- -5'
30183 5' -50.9 NC_006273.1 + 210219 0.66 0.999164
Target:  5'- cGUCAUCGcgucgGACGACGGuaguucuaagAGaCGUAGa -3'
miRNA:   3'- aCGGUAGCaa---CUGCUGCU----------UC-GCAUCg -5'
30183 5' -50.9 NC_006273.1 + 33281 0.66 0.999164
Target:  5'- gGCCuugCGgcGGCaGCGGuuGGCGUGGUu -3'
miRNA:   3'- aCGGua-GCaaCUGcUGCU--UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 109716 0.66 0.999164
Target:  5'- gUGgCAUCGggGAagaGACGcgugAGGCGUucgAGCg -3'
miRNA:   3'- -ACgGUAGCaaCUg--CUGC----UUCGCA---UCG- -5'
30183 5' -50.9 NC_006273.1 + 146821 0.66 0.999113
Target:  5'- cGCCAcuguggcgcgugaaUCGUUGGU-ACGGAGCGUuuuugAGCa -3'
miRNA:   3'- aCGGU--------------AGCAACUGcUGCUUCGCA-----UCG- -5'
30183 5' -50.9 NC_006273.1 + 122644 0.66 0.999059
Target:  5'- cUGCUGUUGcgacggcgaauggGACGugGAccgcgAGUGUAGCg -3'
miRNA:   3'- -ACGGUAGCaa-----------CUGCugCU-----UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 201222 0.66 0.998984
Target:  5'- cGCCA-CGUuuaUGGCGcgagcCGAAGCGgcGUu -3'
miRNA:   3'- aCGGUaGCA---ACUGCu----GCUUCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 94816 0.66 0.998984
Target:  5'- gGCgGUCGgccGACGACGAcgguaGGUG-GGCc -3'
miRNA:   3'- aCGgUAGCaa-CUGCUGCU-----UCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 64789 0.66 0.998984
Target:  5'- cUGCCgGUCuacagacugGGCGACGAAGUGccGCg -3'
miRNA:   3'- -ACGG-UAGcaa------CUGCUGCUUCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 105716 0.66 0.998984
Target:  5'- ---gGUCGcgGACGACaGAAGCG-GGCg -3'
miRNA:   3'- acggUAGCaaCUGCUG-CUUCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 49667 0.66 0.998984
Target:  5'- aGCCGUCGacagcGugGACGAcugGGCGa--- -3'
miRNA:   3'- aCGGUAGCaa---CugCUGCU---UCGCaucg -5'
30183 5' -50.9 NC_006273.1 + 175150 0.66 0.998984
Target:  5'- gUGCCcaGUCGcgGugGACGcgugaguAGCGgucugAGCa -3'
miRNA:   3'- -ACGG--UAGCaaCugCUGCu------UCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 149389 0.66 0.998984
Target:  5'- gUGCUGUUGgucuggGGCGACG-AGCGguUGGUg -3'
miRNA:   3'- -ACGGUAGCaa----CUGCUGCuUCGC--AUCG- -5'
30183 5' -50.9 NC_006273.1 + 189383 0.66 0.998984
Target:  5'- cGCgugugCGggGACGACG-GGCGUuGCg -3'
miRNA:   3'- aCGgua--GCaaCUGCUGCuUCGCAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.