miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 71632 0.66 0.997898
Target:  5'- gGCCGUgGggggagGACGAgGAGGaCGUcGCu -3'
miRNA:   3'- aCGGUAgCaa----CUGCUgCUUC-GCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 164223 0.66 0.998524
Target:  5'- cGCgGguggUGUUGcGCGGCGAcGgGUGGCa -3'
miRNA:   3'- aCGgUa---GCAAC-UGCUGCUuCgCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 140168 0.66 0.997898
Target:  5'- cGCCGUCGUaGACGACGc-GCu---- -3'
miRNA:   3'- aCGGUAGCAaCUGCUGCuuCGcaucg -5'
30183 5' -50.9 NC_006273.1 + 148319 0.66 0.997898
Target:  5'- gUGCUGgagCGc-GACGACGAGGcCGUccuGGCa -3'
miRNA:   3'- -ACGGUa--GCaaCUGCUGCUUC-GCA---UCG- -5'
30183 5' -50.9 NC_006273.1 + 38210 0.66 0.998772
Target:  5'- cGCuCAUcCGgaGACGGCGGAaaccGCGgcGCc -3'
miRNA:   3'- aCG-GUA-GCaaCUGCUGCUU----CGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 162772 0.66 0.998772
Target:  5'- gGCgGUgGUggUGGCGGCGGcAGCGgccGCa -3'
miRNA:   3'- aCGgUAgCA--ACUGCUGCU-UCGCau-CG- -5'
30183 5' -50.9 NC_006273.1 + 87726 0.66 0.997898
Target:  5'- cUGCUGUUGUUG-CGAUGcu-CGUGGCu -3'
miRNA:   3'- -ACGGUAGCAACuGCUGCuucGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 212873 0.66 0.997862
Target:  5'- aGCaaaAUUGguggugUGugGGCGAAacucggcgaaaccGCGUAGCa -3'
miRNA:   3'- aCGg--UAGCa-----ACugCUGCUU-------------CGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 78017 0.66 0.998234
Target:  5'- cGCCGUCGcaGGCGACGcAGCc---- -3'
miRNA:   3'- aCGGUAGCaaCUGCUGCuUCGcaucg -5'
30183 5' -50.9 NC_006273.1 + 149545 0.66 0.998203
Target:  5'- cGCCAUUcuagcGGCGGCGGugguaguGGCGUGGg -3'
miRNA:   3'- aCGGUAGcaa--CUGCUGCU-------UCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 149389 0.66 0.998984
Target:  5'- gUGCUGUUGgucuggGGCGACG-AGCGguUGGUg -3'
miRNA:   3'- -ACGGUAGCaa----CUGCUGCuUCGC--AUCG- -5'
30183 5' -50.9 NC_006273.1 + 189078 0.66 0.997898
Target:  5'- gGCCGcuucuugCGcccgGGCGGCGGAG-GUGGCu -3'
miRNA:   3'- aCGGUa------GCaa--CUGCUGCUUCgCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 104678 0.66 0.998772
Target:  5'- aGCCuagCGagGACGugGAGcuGCGcgAGCu -3'
miRNA:   3'- aCGGua-GCaaCUGCugCUU--CGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 64789 0.66 0.998984
Target:  5'- cUGCCgGUCuacagacugGGCGACGAAGUGccGCg -3'
miRNA:   3'- -ACGG-UAGcaa------CUGCUGCUUCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 167679 0.66 0.998234
Target:  5'- gGCCGcCGUUcGuCGucACGggGCGgcGCg -3'
miRNA:   3'- aCGGUaGCAA-CuGC--UGCuuCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 133746 0.66 0.998772
Target:  5'- gUGCCGUCGUgccuuCGGCc-AGCGUGacGCg -3'
miRNA:   3'- -ACGGUAGCAacu--GCUGcuUCGCAU--CG- -5'
30183 5' -50.9 NC_006273.1 + 186603 0.66 0.999164
Target:  5'- cGCUGUgcacCGaUGACGugGAGGUGUucGCc -3'
miRNA:   3'- aCGGUA----GCaACUGCugCUUCGCAu-CG- -5'
30183 5' -50.9 NC_006273.1 + 95261 0.66 0.997898
Target:  5'- gGCCGaugCGgcGGCGAgGuugGGUGUGGCc -3'
miRNA:   3'- aCGGUa--GCaaCUGCUgCu--UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 49146 0.66 0.998944
Target:  5'- gGCCAgacgguagacggCGUccAUGGCGggGuCGUAGCc -3'
miRNA:   3'- aCGGUa-----------GCAacUGCUGCuuC-GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 37249 0.66 0.998772
Target:  5'- cGCgAcggCGgcGACGACGAGGaggaagacgcCGUGGCc -3'
miRNA:   3'- aCGgUa--GCaaCUGCUGCUUC----------GCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.