miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 142282 0.66 0.997898
Target:  5'- gUGCCGaCGUcgUGugGGCG--GCGUGGa -3'
miRNA:   3'- -ACGGUaGCA--ACugCUGCuuCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 212873 0.66 0.997862
Target:  5'- aGCaaaAUUGguggugUGugGGCGAAacucggcgaaaccGCGUAGCa -3'
miRNA:   3'- aCGg--UAGCa-----ACugCUGCUU-------------CGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 15685 0.66 0.998234
Target:  5'- cGCguUCGUcGACGcGCGAgGGCGcagAGCg -3'
miRNA:   3'- aCGguAGCAaCUGC-UGCU-UCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 196988 0.66 0.998524
Target:  5'- cGCCAccgcagCGgcGGCGACGGacggcGGCGguaacAGCa -3'
miRNA:   3'- aCGGUa-----GCaaCUGCUGCU-----UCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 81116 0.66 0.998203
Target:  5'- aGCCGcgucaucUCGgcGGCGuACGAGGgGUuGCg -3'
miRNA:   3'- aCGGU-------AGCaaCUGC-UGCUUCgCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 35414 0.66 0.998772
Target:  5'- aUGCCA-CcaUGAacUGACGAuGGCGUGGUa -3'
miRNA:   3'- -ACGGUaGcaACU--GCUGCU-UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 33281 0.66 0.999164
Target:  5'- gGCCuugCGgcGGCaGCGGuuGGCGUGGUu -3'
miRNA:   3'- aCGGua-GCaaCUGcUGCU--UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 149389 0.66 0.998984
Target:  5'- gUGCUGUUGgucuggGGCGACG-AGCGguUGGUg -3'
miRNA:   3'- -ACGGUAGCaa----CUGCUGCuUCGC--AUCG- -5'
30183 5' -50.9 NC_006273.1 + 38634 0.66 0.998772
Target:  5'- gGCCGUCagcagcGACG-CGggGUGcGGCg -3'
miRNA:   3'- aCGGUAGcaa---CUGCuGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 120590 0.66 0.999164
Target:  5'- uUGCCggUGgcGGCGACGuuuggguuGCGcAGCg -3'
miRNA:   3'- -ACGGuaGCaaCUGCUGCuu------CGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 109716 0.66 0.999164
Target:  5'- gUGgCAUCGggGAagaGACGcgugAGGCGUucgAGCg -3'
miRNA:   3'- -ACgGUAGCaaCUg--CUGC----UUCGCA---UCG- -5'
30183 5' -50.9 NC_006273.1 + 202560 0.66 0.998772
Target:  5'- gGCCggCGUggcgGcCGACGGcAGCGU-GCu -3'
miRNA:   3'- aCGGuaGCAa---CuGCUGCU-UCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 152887 0.66 0.998234
Target:  5'- aGCCAUUGggGcCGugGGuggcGCgGUGGCc -3'
miRNA:   3'- aCGGUAGCaaCuGCugCUu---CG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 114447 0.66 0.998234
Target:  5'- cGUCAcCGgcGGCGGCGccauGGCG-AGCg -3'
miRNA:   3'- aCGGUaGCaaCUGCUGCu---UCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 86526 0.66 0.998772
Target:  5'- cGCCGUCGUcacGCGGC--AGCGgcGGCa -3'
miRNA:   3'- aCGGUAGCAac-UGCUGcuUCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 45557 0.66 0.998234
Target:  5'- aUGCCAccCGgcGugGcCGAGGCGguacaAGCu -3'
miRNA:   3'- -ACGGUa-GCaaCugCuGCUUCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 68520 0.66 0.999164
Target:  5'- cUGCCGUaccUGuCGGCGGAGCGcacGGUg -3'
miRNA:   3'- -ACGGUAgcaACuGCUGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 96284 0.66 0.998524
Target:  5'- cGCCGUCGagGGCGACGcaaAAGCc---- -3'
miRNA:   3'- aCGGUAGCaaCUGCUGC---UUCGcaucg -5'
30183 5' -50.9 NC_006273.1 + 94714 0.66 0.998234
Target:  5'- cGCCGUCGUcGccuGCGGCGuuGGCGcagggaauucgUAGCc -3'
miRNA:   3'- aCGGUAGCAaC---UGCUGCu-UCGC-----------AUCG- -5'
30183 5' -50.9 NC_006273.1 + 186603 0.66 0.999164
Target:  5'- cGCUGUgcacCGaUGACGugGAGGUGUucGCc -3'
miRNA:   3'- aCGGUA----GCaACUGCugCUUCGCAu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.