Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 176952 | 1.14 | 0.007667 |
Target: 5'- gUGCCAUCGUUGACGACGAAGCGUAGCa -3' miRNA: 3'- -ACGGUAGCAACUGCUGCUUCGCAUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 51111 | 0.8 | 0.614622 |
Target: 5'- cGCCGggaaGggGACGACGAGGCGgugagGGCu -3' miRNA: 3'- aCGGUag--CaaCUGCUGCUUCGCa----UCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 203726 | 0.78 | 0.716303 |
Target: 5'- cGCCGUCcUUGACGACGcAGC-UGGCc -3' miRNA: 3'- aCGGUAGcAACUGCUGCuUCGcAUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 158313 | 0.77 | 0.726222 |
Target: 5'- gGCCAgcucgCGUUGGCGGCGcuuGCGgAGCa -3' miRNA: 3'- aCGGUa----GCAACUGCUGCuu-CGCaUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 76536 | 0.74 | 0.867739 |
Target: 5'- cGCCGcUCGgcgcGGCGcACGAGGaCGUGGCg -3' miRNA: 3'- aCGGU-AGCaa--CUGC-UGCUUC-GCAUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 30770 | 0.74 | 0.874361 |
Target: 5'- cGCCggCGgcggUGGCGACGAuaacagcagcagcGGCgGUAGCa -3' miRNA: 3'- aCGGuaGCa---ACUGCUGCU-------------UCG-CAUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 189266 | 0.74 | 0.875086 |
Target: 5'- cGUCGUCGUUGGaGACGGAGgGUucuGCc -3' miRNA: 3'- aCGGUAGCAACUgCUGCUUCgCAu--CG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 102598 | 0.74 | 0.882215 |
Target: 5'- cGCCGUCGUUGACG-CGAAucauauaaauGCccGGCa -3' miRNA: 3'- aCGGUAGCAACUGCuGCUU----------CGcaUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 92798 | 0.74 | 0.882215 |
Target: 5'- aGgCAUCaaccccgUGGCGGCGAGGCGgugAGCa -3' miRNA: 3'- aCgGUAGca-----ACUGCUGCUUCGCa--UCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 15754 | 0.74 | 0.8958 |
Target: 5'- aGCCA-CGUgGACGAUGAAGaaCGUGGUu -3' miRNA: 3'- aCGGUaGCAaCUGCUGCUUC--GCAUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 157172 | 0.74 | 0.8958 |
Target: 5'- gGUCAUCGUcguccaUGACGACGugucuauAGCGU-GCg -3' miRNA: 3'- aCGGUAGCA------ACUGCUGCu------UCGCAuCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 64081 | 0.73 | 0.902249 |
Target: 5'- gGCCAUCagagcaGCGGCGggGCG-AGCa -3' miRNA: 3'- aCGGUAGcaac--UGCUGCuuCGCaUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 72861 | 0.73 | 0.902249 |
Target: 5'- gGCCAUCGUgcgGACGGCcacGGUGU-GCa -3' miRNA: 3'- aCGGUAGCAa--CUGCUGcu-UCGCAuCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 202293 | 0.73 | 0.908463 |
Target: 5'- gGUCAUCGac--CGACGAGGCGcGGCg -3' miRNA: 3'- aCGGUAGCaacuGCUGCUUCGCaUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 164456 | 0.73 | 0.920183 |
Target: 5'- gGCCGcUCGaUGACGAUGucGGCGcGGCg -3' miRNA: 3'- aCGGU-AGCaACUGCUGCu-UCGCaUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 92948 | 0.73 | 0.925684 |
Target: 5'- cGUCGUCGUgUGACGugGAGucggccuccaccGCcGUGGCg -3' miRNA: 3'- aCGGUAGCA-ACUGCugCUU------------CG-CAUCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 210702 | 0.73 | 0.925684 |
Target: 5'- aGCUGUCGgaacgGACGACGGcAGCGcgGGUg -3' miRNA: 3'- aCGGUAGCaa---CUGCUGCU-UCGCa-UCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 39375 | 0.72 | 0.930946 |
Target: 5'- cGCUAccCGgcGAgGACGAGGCGUGGa -3' miRNA: 3'- aCGGUa-GCaaCUgCUGCUUCGCAUCg -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 1974 | 0.72 | 0.935968 |
Target: 5'- gGCCGgcgaCGggGACGACGucGCGccAGCg -3' miRNA: 3'- aCGGUa---GCaaCUGCUGCuuCGCa-UCG- -5' |
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30183 | 5' | -50.9 | NC_006273.1 | + | 7691 | 0.72 | 0.935968 |
Target: 5'- cGCCGUCGUUGuuGACGAuGCc--GCa -3' miRNA: 3'- aCGGUAGCAACugCUGCUuCGcauCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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