Results 21 - 40 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 34386 | 0.72 | 0.940751 |
Target: 5'- cGCCAcCGUUGACGugGGcGGCGa--- -3' miRNA: 3'- aCGGUaGCAACUGCugCU-UCGCaucg -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 27239 | 0.72 | 0.940751 |
Target: 5'- cGUCAU-GUUGGgGGCGAGGCGUAa- -3' miRNA: 3'- aCGGUAgCAACUgCUGCUUCGCAUcg -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 21531 | 0.72 | 0.942598 |
Target: 5'- cGCCGgcgggcgcuggcguuUCGagGACGGCGgcGCGgcGCa -3' miRNA: 3'- aCGGU---------------AGCaaCUGCUGCuuCGCauCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 205185 | 0.72 | 0.945297 |
Target: 5'- gGCCG-CGgugagGACaagaaGACGGAGCGUGGUg -3' miRNA: 3'- aCGGUaGCaa---CUG-----CUGCUUCGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 82277 | 0.72 | 0.949608 |
Target: 5'- cGUCGUCGUacuugGGCGugGGccgcGGCGUGGa -3' miRNA: 3'- aCGGUAGCAa----CUGCugCU----UCGCAUCg -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 187400 | 0.72 | 0.949608 |
Target: 5'- gGCCGagGUguacGugGACGcGGGCGUGGUg -3' miRNA: 3'- aCGGUagCAa---CugCUGC-UUCGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 187433 | 0.72 | 0.949608 |
Target: 5'- gGCgGUCuGUUauccGCGACGAcGCGUAGCu -3' miRNA: 3'- aCGgUAG-CAAc---UGCUGCUuCGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 34146 | 0.71 | 0.953687 |
Target: 5'- aGCCGgccCGUUGuguaugcaugucGCGACagaGAGGUGUAGCg -3' miRNA: 3'- aCGGUa--GCAAC------------UGCUG---CUUCGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 54943 | 0.71 | 0.953687 |
Target: 5'- cUGCaGUCGgguggUGGCGGCGGuGGCGUGGa -3' miRNA: 3'- -ACGgUAGCa----ACUGCUGCU-UCGCAUCg -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 73735 | 0.71 | 0.955254 |
Target: 5'- cGCCAUgGgUGGCGGCGGcggccgaggcccggcAGCGgcGCc -3' miRNA: 3'- aCGGUAgCaACUGCUGCU---------------UCGCauCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 111961 | 0.71 | 0.957162 |
Target: 5'- cUGCCGcgCGgUGGCGGucaagucUGGAGCGUAGUg -3' miRNA: 3'- -ACGGUa-GCaACUGCU-------GCUUCGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 58663 | 0.71 | 0.957537 |
Target: 5'- cGCCGUUcUUGACGGCGu--UGUGGCu -3' miRNA: 3'- aCGGUAGcAACUGCUGCuucGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 193197 | 0.71 | 0.957537 |
Target: 5'- gGCCGUCGgcuauuACGACGAagaggaaaAGCGUcGCg -3' miRNA: 3'- aCGGUAGCaac---UGCUGCU--------UCGCAuCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 210176 | 0.71 | 0.964568 |
Target: 5'- --aCggCGUUGACGACGAAGCaUGGg -3' miRNA: 3'- acgGuaGCAACUGCUGCUUCGcAUCg -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 15422 | 0.71 | 0.964568 |
Target: 5'- cGCCG-CGUUGcccgaugaGCGACGcGAGCGcgAGCg -3' miRNA: 3'- aCGGUaGCAAC--------UGCUGC-UUCGCa-UCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 177112 | 0.71 | 0.967758 |
Target: 5'- gGCgGUgGgucccGACGACGAGGUGgcGCa -3' miRNA: 3'- aCGgUAgCaa---CUGCUGCUUCGCauCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 95173 | 0.7 | 0.973518 |
Target: 5'- aGCaCGUCGUgu-CGACGuagaaaagacGGCGUGGCg -3' miRNA: 3'- aCG-GUAGCAacuGCUGCu---------UCGCAUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 216208 | 0.7 | 0.973518 |
Target: 5'- cGCCGcauUCGUUGu--ACGGAGCGcGGCa -3' miRNA: 3'- aCGGU---AGCAACugcUGCUUCGCaUCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 113733 | 0.7 | 0.973518 |
Target: 5'- cGCCGgaggUGGCGACGGcGGCGgcGCc -3' miRNA: 3'- aCGGUagcaACUGCUGCU-UCGCauCG- -5' |
|||||||
30183 | 5' | -50.9 | NC_006273.1 | + | 31727 | 0.7 | 0.973518 |
Target: 5'- cUGCCGUCGUUG-CG-CGAAgacuacGCGcAGCu -3' miRNA: 3'- -ACGGUAGCAACuGCuGCUU------CGCaUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home