miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 49146 0.66 0.998944
Target:  5'- gGCCAgacgguagacggCGUccAUGGCGggGuCGUAGCc -3'
miRNA:   3'- aCGGUa-----------GCAacUGCUGCuuC-GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 159875 0.66 0.998924
Target:  5'- gGCCAguucugcaucuaggUCGcaGGCGGcCGAAGCGccGGCg -3'
miRNA:   3'- aCGGU--------------AGCaaCUGCU-GCUUCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 37249 0.66 0.998772
Target:  5'- cGCgAcggCGgcGACGACGAGGaggaagacgcCGUGGCc -3'
miRNA:   3'- aCGgUa--GCaaCUGCUGCUUC----------GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 38210 0.66 0.998772
Target:  5'- cGCuCAUcCGgaGACGGCGGAaaccGCGgcGCc -3'
miRNA:   3'- aCG-GUA-GCaaCUGCUGCUU----CGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 104678 0.66 0.998772
Target:  5'- aGCCuagCGagGACGugGAGcuGCGcgAGCu -3'
miRNA:   3'- aCGGua-GCaaCUGCugCUU--CGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 133746 0.66 0.998772
Target:  5'- gUGCCGUCGUgccuuCGGCc-AGCGUGacGCg -3'
miRNA:   3'- -ACGGUAGCAacu--GCUGcuUCGCAU--CG- -5'
30183 5' -50.9 NC_006273.1 + 162772 0.66 0.998772
Target:  5'- gGCgGUgGUggUGGCGGCGGcAGCGgccGCa -3'
miRNA:   3'- aCGgUAgCA--ACUGCUGCU-UCGCau-CG- -5'
30183 5' -50.9 NC_006273.1 + 202560 0.66 0.998772
Target:  5'- gGCCggCGUggcgGcCGACGGcAGCGU-GCu -3'
miRNA:   3'- aCGGuaGCAa---CuGCUGCU-UCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 95223 0.66 0.998772
Target:  5'- aGCgCGUCGUcuACGACGgcGUuUGGCc -3'
miRNA:   3'- aCG-GUAGCAacUGCUGCuuCGcAUCG- -5'
30183 5' -50.9 NC_006273.1 + 35414 0.66 0.998772
Target:  5'- aUGCCA-CcaUGAacUGACGAuGGCGUGGUa -3'
miRNA:   3'- -ACGGUaGcaACU--GCUGCU-UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 86526 0.66 0.998772
Target:  5'- cGCCGUCGUcacGCGGC--AGCGgcGGCa -3'
miRNA:   3'- aCGGUAGCAac-UGCUGcuUCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 38634 0.66 0.998772
Target:  5'- gGCCGUCagcagcGACG-CGggGUGcGGCg -3'
miRNA:   3'- aCGGUAGcaa---CUGCuGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 196988 0.66 0.998524
Target:  5'- cGCCAccgcagCGgcGGCGACGGacggcGGCGguaacAGCa -3'
miRNA:   3'- aCGGUa-----GCaaCUGCUGCU-----UCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 164223 0.66 0.998524
Target:  5'- cGCgGguggUGUUGcGCGGCGAcGgGUGGCa -3'
miRNA:   3'- aCGgUa---GCAAC-UGCUGCUuCgCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 96284 0.66 0.998524
Target:  5'- cGCCGUCGagGGCGACGcaaAAGCc---- -3'
miRNA:   3'- aCGGUAGCaaCUGCUGC---UUCGcaucg -5'
30183 5' -50.9 NC_006273.1 + 152887 0.66 0.998234
Target:  5'- aGCCAUUGggGcCGugGGuggcGCgGUGGCc -3'
miRNA:   3'- aCGGUAGCaaCuGCugCUu---CG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 45557 0.66 0.998234
Target:  5'- aUGCCAccCGgcGugGcCGAGGCGguacaAGCu -3'
miRNA:   3'- -ACGGUa-GCaaCugCuGCUUCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 167679 0.66 0.998234
Target:  5'- gGCCGcCGUUcGuCGucACGggGCGgcGCg -3'
miRNA:   3'- aCGGUaGCAA-CuGC--UGCuuCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 78017 0.66 0.998234
Target:  5'- cGCCGUCGcaGGCGACGcAGCc---- -3'
miRNA:   3'- aCGGUAGCaaCUGCUGCuUCGcaucg -5'
30183 5' -50.9 NC_006273.1 + 15685 0.66 0.998234
Target:  5'- cGCguUCGUcGACGcGCGAgGGCGcagAGCg -3'
miRNA:   3'- aCGguAGCAaCUGC-UGCU-UCGCa--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.