miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 152887 0.66 0.998234
Target:  5'- aGCCAUUGggGcCGugGGuggcGCgGUGGCc -3'
miRNA:   3'- aCGGUAGCaaCuGCugCUu---CG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 15685 0.66 0.998234
Target:  5'- cGCguUCGUcGACGcGCGAgGGCGcagAGCg -3'
miRNA:   3'- aCGguAGCAaCUGC-UGCU-UCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 81116 0.66 0.998203
Target:  5'- aGCCGcgucaucUCGgcGGCGuACGAGGgGUuGCg -3'
miRNA:   3'- aCGGU-------AGCaaCUGC-UGCUUCgCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 149545 0.66 0.998203
Target:  5'- cGCCAUUcuagcGGCGGCGGugguaguGGCGUGGg -3'
miRNA:   3'- aCGGUAGcaa--CUGCUGCU-------UCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 95261 0.66 0.997898
Target:  5'- gGCCGaugCGgcGGCGAgGuugGGUGUGGCc -3'
miRNA:   3'- aCGGUa--GCaaCUGCUgCu--UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 189078 0.66 0.997898
Target:  5'- gGCCGcuucuugCGcccgGGCGGCGGAG-GUGGCu -3'
miRNA:   3'- aCGGUa------GCaa--CUGCUGCUUCgCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 87726 0.66 0.997898
Target:  5'- cUGCUGUUGUUG-CGAUGcu-CGUGGCu -3'
miRNA:   3'- -ACGGUAGCAACuGCUGCuucGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 140168 0.66 0.997898
Target:  5'- cGCCGUCGUaGACGACGc-GCu---- -3'
miRNA:   3'- aCGGUAGCAaCUGCUGCuuCGcaucg -5'
30183 5' -50.9 NC_006273.1 + 142282 0.66 0.997898
Target:  5'- gUGCCGaCGUcgUGugGGCG--GCGUGGa -3'
miRNA:   3'- -ACGGUaGCA--ACugCUGCuuCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 148319 0.66 0.997898
Target:  5'- gUGCUGgagCGc-GACGACGAGGcCGUccuGGCa -3'
miRNA:   3'- -ACGGUa--GCaaCUGCUGCUUC-GCA---UCG- -5'
30183 5' -50.9 NC_006273.1 + 71632 0.66 0.997898
Target:  5'- gGCCGUgGggggagGACGAgGAGGaCGUcGCu -3'
miRNA:   3'- aCGGUAgCaa----CUGCUgCUUC-GCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 212873 0.66 0.997862
Target:  5'- aGCaaaAUUGguggugUGugGGCGAAacucggcgaaaccGCGUAGCa -3'
miRNA:   3'- aCGg--UAGCa-----ACugCUGCUU-------------CGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 147227 0.67 0.99751
Target:  5'- gUGCUcuucuUCGUggaUGGCuGCGAGGCGcUGGCc -3'
miRNA:   3'- -ACGGu----AGCA---ACUGcUGCUUCGC-AUCG- -5'
30183 5' -50.9 NC_006273.1 + 198002 0.67 0.99751
Target:  5'- gGCUgagCGUgugGAgGACGggGUGgAGCg -3'
miRNA:   3'- aCGGua-GCAa--CUgCUGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 146454 0.67 0.99751
Target:  5'- aGCUGUCG-UGGUGACuGAGCGcAGCg -3'
miRNA:   3'- aCGGUAGCaACUGCUGcUUCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 158769 0.67 0.99751
Target:  5'- gGCCGcCGgccgcGGCcACGGAcGCGUAGCg -3'
miRNA:   3'- aCGGUaGCaa---CUGcUGCUU-CGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 215676 0.67 0.99751
Target:  5'- gGCUAUCuGgaccUGACcGCGGAGCGacaUGGCg -3'
miRNA:   3'- aCGGUAG-Ca---ACUGcUGCUUCGC---AUCG- -5'
30183 5' -50.9 NC_006273.1 + 146890 0.67 0.99751
Target:  5'- -aCCAg-GUUGACGAUG-AGCGU-GCg -3'
miRNA:   3'- acGGUagCAACUGCUGCuUCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 206169 0.67 0.997064
Target:  5'- cGCCA-CGagUGACGACGAcGCugcuuggGGCa -3'
miRNA:   3'- aCGGUaGCa-ACUGCUGCUuCGca-----UCG- -5'
30183 5' -50.9 NC_006273.1 + 158261 0.67 0.997064
Target:  5'- cGCCGUgGUUGuuGGCcGA-CGUAGCg -3'
miRNA:   3'- aCGGUAgCAACugCUGcUUcGCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.