miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 784 0.69 0.984609
Target:  5'- cUGCCGUgGcacacgGACGACGGAGcCGUccGCg -3'
miRNA:   3'- -ACGGUAgCaa----CUGCUGCUUC-GCAu-CG- -5'
30183 5' -50.9 NC_006273.1 + 1974 0.72 0.935968
Target:  5'- gGCCGgcgaCGggGACGACGucGCGccAGCg -3'
miRNA:   3'- aCGGUa---GCaaCUGCUGCuuCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 7683 0.67 0.996554
Target:  5'- aUGCCgAUgGUaugGGCGGCGGcGGCaGUGGCc -3'
miRNA:   3'- -ACGG-UAgCAa--CUGCUGCU-UCG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 7691 0.72 0.935968
Target:  5'- cGCCGUCGUUGuuGACGAuGCc--GCa -3'
miRNA:   3'- aCGGUAGCAACugCUGCUuCGcauCG- -5'
30183 5' -50.9 NC_006273.1 + 14008 0.66 0.999164
Target:  5'- gGCgGgcgCGggGugG-CGGAGCGgggAGCg -3'
miRNA:   3'- aCGgUa--GCaaCugCuGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 15422 0.71 0.964568
Target:  5'- cGCCG-CGUUGcccgaugaGCGACGcGAGCGcgAGCg -3'
miRNA:   3'- aCGGUaGCAAC--------UGCUGC-UUCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 15685 0.66 0.998234
Target:  5'- cGCguUCGUcGACGcGCGAgGGCGcagAGCg -3'
miRNA:   3'- aCGguAGCAaCUGC-UGCU-UCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 15754 0.74 0.8958
Target:  5'- aGCCA-CGUgGACGAUGAAGaaCGUGGUu -3'
miRNA:   3'- aCGGUaGCAaCUGCUGCUUC--GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 21531 0.72 0.942598
Target:  5'- cGCCGgcgggcgcuggcguuUCGagGACGGCGgcGCGgcGCa -3'
miRNA:   3'- aCGGU---------------AGCaaCUGCUGCuuCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 21931 0.69 0.989303
Target:  5'- cGCCGgcaUCGgguaGACGGCGcuAGCGgcGCu -3'
miRNA:   3'- aCGGU---AGCaa--CUGCUGCu-UCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 27239 0.72 0.940751
Target:  5'- cGUCAU-GUUGGgGGCGAGGCGUAa- -3'
miRNA:   3'- aCGGUAgCAACUgCUGCUUCGCAUcg -5'
30183 5' -50.9 NC_006273.1 + 30770 0.74 0.874361
Target:  5'- cGCCggCGgcggUGGCGACGAuaacagcagcagcGGCgGUAGCa -3'
miRNA:   3'- aCGGuaGCa---ACUGCUGCU-------------UCG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 31660 0.67 0.996444
Target:  5'- gGCCAgcugcgUCGUcaagGACGGCGuguuggacgcuGUGUGGCg -3'
miRNA:   3'- aCGGU------AGCAa---CUGCUGCuu---------CGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 31727 0.7 0.973518
Target:  5'- cUGCCGUCGUUG-CG-CGAAgacuacGCGcAGCu -3'
miRNA:   3'- -ACGGUAGCAACuGCuGCUU------CGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 31760 0.68 0.991752
Target:  5'- gGCCGUCGcgGACGAaagUGggGcCGUcuGCa -3'
miRNA:   3'- aCGGUAGCaaCUGCU---GCuuC-GCAu-CG- -5'
30183 5' -50.9 NC_006273.1 + 33281 0.66 0.999164
Target:  5'- gGCCuugCGgcGGCaGCGGuuGGCGUGGUu -3'
miRNA:   3'- aCGGua-GCaaCUGcUGCU--UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 34146 0.71 0.953687
Target:  5'- aGCCGgccCGUUGuguaugcaugucGCGACagaGAGGUGUAGCg -3'
miRNA:   3'- aCGGUa--GCAAC------------UGCUG---CUUCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 34174 0.69 0.982543
Target:  5'- cGCCAUaaacgUGGCGugGAaaaaaacGGCGgcGCg -3'
miRNA:   3'- aCGGUAgca--ACUGCugCU-------UCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 34386 0.72 0.940751
Target:  5'- cGCCAcCGUUGACGugGGcGGCGa--- -3'
miRNA:   3'- aCGGUaGCAACUGCugCU-UCGCaucg -5'
30183 5' -50.9 NC_006273.1 + 34477 0.69 0.986321
Target:  5'- cGCC-UCGUgcaccaGACGGCGGaaAGCGccGGCg -3'
miRNA:   3'- aCGGuAGCAa-----CUGCUGCU--UCGCa-UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.