miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 35414 0.66 0.998772
Target:  5'- aUGCCA-CcaUGAacUGACGAuGGCGUGGUa -3'
miRNA:   3'- -ACGGUaGcaACU--GCUGCU-UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 37249 0.66 0.998772
Target:  5'- cGCgAcggCGgcGACGACGAGGaggaagacgcCGUGGCc -3'
miRNA:   3'- aCGgUa--GCaaCUGCUGCUUC----------GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 37327 0.67 0.995315
Target:  5'- gUGCCGUUGcuUUGGCGGCagcgGAGGUGggccggGGCc -3'
miRNA:   3'- -ACGGUAGC--AACUGCUG----CUUCGCa-----UCG- -5'
30183 5' -50.9 NC_006273.1 + 38210 0.66 0.998772
Target:  5'- cGCuCAUcCGgaGACGGCGGAaaccGCGgcGCc -3'
miRNA:   3'- aCG-GUA-GCaaCUGCUGCUU----CGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 38634 0.66 0.998772
Target:  5'- gGCCGUCagcagcGACG-CGggGUGcGGCg -3'
miRNA:   3'- aCGGUAGcaa---CUGCuGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 39375 0.72 0.930946
Target:  5'- cGCUAccCGgcGAgGACGAGGCGUGGa -3'
miRNA:   3'- aCGGUa-GCaaCUgCUGCUUCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 45557 0.66 0.998234
Target:  5'- aUGCCAccCGgcGugGcCGAGGCGguacaAGCu -3'
miRNA:   3'- -ACGGUa-GCaaCugCuGCUUCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 49146 0.66 0.998944
Target:  5'- gGCCAgacgguagacggCGUccAUGGCGggGuCGUAGCc -3'
miRNA:   3'- aCGGUa-----------GCAacUGCUGCuuC-GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 49436 0.69 0.989303
Target:  5'- gGUCGUCGaUGcUGuAgGAAGCGUAGCc -3'
miRNA:   3'- aCGGUAGCaACuGC-UgCUUCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 49667 0.66 0.998984
Target:  5'- aGCCGUCGacagcGugGACGAcugGGCGa--- -3'
miRNA:   3'- aCGGUAGCaa---CugCUGCU---UCGCaucg -5'
30183 5' -50.9 NC_006273.1 + 51111 0.8 0.614622
Target:  5'- cGCCGggaaGggGACGACGAGGCGgugagGGCu -3'
miRNA:   3'- aCGGUag--CaaCUGCUGCUUCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 54943 0.71 0.953687
Target:  5'- cUGCaGUCGgguggUGGCGGCGGuGGCGUGGa -3'
miRNA:   3'- -ACGgUAGCa----ACUGCUGCU-UCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 58663 0.71 0.957537
Target:  5'- cGCCGUUcUUGACGGCGu--UGUGGCu -3'
miRNA:   3'- aCGGUAGcAACUGCUGCuucGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 60302 0.69 0.982739
Target:  5'- gUGCCGUCGggaGACGGCGAcuCGggacGCc -3'
miRNA:   3'- -ACGGUAGCaa-CUGCUGCUucGCau--CG- -5'
30183 5' -50.9 NC_006273.1 + 61607 0.69 0.984609
Target:  5'- cGCgCGUCcaUGAUGGCGAGGCGcacGGUa -3'
miRNA:   3'- aCG-GUAGcaACUGCUGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 64081 0.73 0.902249
Target:  5'- gGCCAUCagagcaGCGGCGggGCG-AGCa -3'
miRNA:   3'- aCGGUAGcaac--UGCUGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 64789 0.66 0.998984
Target:  5'- cUGCCgGUCuacagacugGGCGACGAAGUGccGCg -3'
miRNA:   3'- -ACGG-UAGcaa------CUGCUGCUUCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 68520 0.66 0.999164
Target:  5'- cUGCCGUaccUGuCGGCGGAGCGcacGGUg -3'
miRNA:   3'- -ACGGUAgcaACuGCUGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 71632 0.66 0.997898
Target:  5'- gGCCGUgGggggagGACGAgGAGGaCGUcGCu -3'
miRNA:   3'- aCGGUAgCaa----CUGCUgCUUC-GCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 72014 0.67 0.995315
Target:  5'- cUGCUGUgGUUGACGACGAcAGUcccGCc -3'
miRNA:   3'- -ACGGUAgCAACUGCUGCU-UCGcauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.