miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 228332 0.68 0.99433
Target:  5'- cGgCAUCGUgcuucUGGCGGCGGacgcucucggacuuGGCG-AGCg -3'
miRNA:   3'- aCgGUAGCA-----ACUGCUGCU--------------UCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 227273 0.69 0.986963
Target:  5'- aGCCGUgCGUcacccgcugcuuuucUGGCGAC---GCGUGGCg -3'
miRNA:   3'- aCGGUA-GCA---------------ACUGCUGcuuCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 216208 0.7 0.973518
Target:  5'- cGCCGcauUCGUUGu--ACGGAGCGcGGCa -3'
miRNA:   3'- aCGGU---AGCAACugcUGCUUCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 215676 0.67 0.99751
Target:  5'- gGCUAUCuGgaccUGACcGCGGAGCGacaUGGCg -3'
miRNA:   3'- aCGGUAG-Ca---ACUGcUGCUUCGC---AUCG- -5'
30183 5' -50.9 NC_006273.1 + 212873 0.66 0.997862
Target:  5'- aGCaaaAUUGguggugUGugGGCGAAacucggcgaaaccGCGUAGCa -3'
miRNA:   3'- aCGg--UAGCa-----ACugCUGCUU-------------CGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 210702 0.73 0.925684
Target:  5'- aGCUGUCGgaacgGACGACGGcAGCGcgGGUg -3'
miRNA:   3'- aCGGUAGCaa---CUGCUGCU-UCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 210219 0.66 0.999164
Target:  5'- cGUCAUCGcgucgGACGACGGuaguucuaagAGaCGUAGa -3'
miRNA:   3'- aCGGUAGCaa---CUGCUGCU----------UC-GCAUCg -5'
30183 5' -50.9 NC_006273.1 + 210176 0.71 0.964568
Target:  5'- --aCggCGUUGACGACGAAGCaUGGg -3'
miRNA:   3'- acgGuaGCAACUGCUGCUUCGcAUCg -5'
30183 5' -50.9 NC_006273.1 + 208364 0.68 0.993735
Target:  5'- gUGCUGUUGagGAUGACGcuGAGCGU-GCc -3'
miRNA:   3'- -ACGGUAGCaaCUGCUGC--UUCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 206169 0.67 0.997064
Target:  5'- cGCCA-CGagUGACGACGAcGCugcuuggGGCa -3'
miRNA:   3'- aCGGUaGCa-ACUGCUGCUuCGca-----UCG- -5'
30183 5' -50.9 NC_006273.1 + 205185 0.72 0.945297
Target:  5'- gGCCG-CGgugagGACaagaaGACGGAGCGUGGUg -3'
miRNA:   3'- aCGGUaGCaa---CUG-----CUGCUUCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 204805 0.7 0.977079
Target:  5'- cGCCGgucucgcgcacgagcUCGaagGACGACGGAGCGUccgAGg -3'
miRNA:   3'- aCGGU---------------AGCaa-CUGCUGCUUCGCA---UCg -5'
30183 5' -50.9 NC_006273.1 + 203726 0.78 0.716303
Target:  5'- cGCCGUCcUUGACGACGcAGC-UGGCc -3'
miRNA:   3'- aCGGUAGcAACUGCUGCuUCGcAUCG- -5'
30183 5' -50.9 NC_006273.1 + 202560 0.66 0.998772
Target:  5'- gGCCggCGUggcgGcCGACGGcAGCGU-GCu -3'
miRNA:   3'- aCGGuaGCAa---CuGCUGCU-UCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 202293 0.73 0.908463
Target:  5'- gGUCAUCGac--CGACGAGGCGcGGCg -3'
miRNA:   3'- aCGGUAGCaacuGCUGCUUCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 201222 0.66 0.998984
Target:  5'- cGCCA-CGUuuaUGGCGcgagcCGAAGCGgcGUu -3'
miRNA:   3'- aCGGUaGCA---ACUGCu----GCUUCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 198002 0.67 0.99751
Target:  5'- gGCUgagCGUgugGAgGACGggGUGgAGCg -3'
miRNA:   3'- aCGGua-GCAa--CUgCUGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 196988 0.66 0.998524
Target:  5'- cGCCAccgcagCGgcGGCGACGGacggcGGCGguaacAGCa -3'
miRNA:   3'- aCGGUa-----GCaaCUGCUGCU-----UCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 196866 0.69 0.982739
Target:  5'- gGCCGgcgaCGggGACGACGucgccgccAGCGgcgAGCg -3'
miRNA:   3'- aCGGUa---GCaaCUGCUGCu-------UCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 196696 0.7 0.9761
Target:  5'- gGCCGUaGUUGucGCGguccGCGucGCGUAGCg -3'
miRNA:   3'- aCGGUAgCAAC--UGC----UGCuuCGCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.