miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 188026 0.69 0.982543
Target:  5'- uUGCUAUCGUcgccgguuucgGGCGAUGAcagcgccGGCGgcGCg -3'
miRNA:   3'- -ACGGUAGCAa----------CUGCUGCU-------UCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 187433 0.72 0.949608
Target:  5'- gGCgGUCuGUUauccGCGACGAcGCGUAGCu -3'
miRNA:   3'- aCGgUAG-CAAc---UGCUGCUuCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 54943 0.71 0.953687
Target:  5'- cUGCaGUCGgguggUGGCGGCGGuGGCGUGGa -3'
miRNA:   3'- -ACGgUAGCa----ACUGCUGCU-UCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 73735 0.71 0.955254
Target:  5'- cGCCAUgGgUGGCGGCGGcggccgaggcccggcAGCGgcGCc -3'
miRNA:   3'- aCGGUAgCaACUGCUGCU---------------UCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 111961 0.71 0.957162
Target:  5'- cUGCCGcgCGgUGGCGGucaagucUGGAGCGUAGUg -3'
miRNA:   3'- -ACGGUa-GCaACUGCU-------GCUUCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 210176 0.71 0.964568
Target:  5'- --aCggCGUUGACGACGAAGCaUGGg -3'
miRNA:   3'- acgGuaGCAACUGCUGCUUCGcAUCg -5'
30183 5' -50.9 NC_006273.1 + 31727 0.7 0.973518
Target:  5'- cUGCCGUCGUUG-CG-CGAAgacuacGCGcAGCu -3'
miRNA:   3'- -ACGGUAGCAACuGCuGCUU------CGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 113733 0.7 0.973518
Target:  5'- cGCCGgaggUGGCGACGGcGGCGgcGCc -3'
miRNA:   3'- aCGGUagcaACUGCUGCU-UCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 216208 0.7 0.973518
Target:  5'- cGCCGcauUCGUUGu--ACGGAGCGcGGCa -3'
miRNA:   3'- aCGGU---AGCAACugcUGCUUCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 21531 0.72 0.942598
Target:  5'- cGCCGgcgggcgcuggcguuUCGagGACGGCGgcGCGgcGCa -3'
miRNA:   3'- aCGGU---------------AGCaaCUGCUGCuuCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 27239 0.72 0.940751
Target:  5'- cGUCAU-GUUGGgGGCGAGGCGUAa- -3'
miRNA:   3'- aCGGUAgCAACUgCUGCUUCGCAUcg -5'
30183 5' -50.9 NC_006273.1 + 39375 0.72 0.930946
Target:  5'- cGCUAccCGgcGAgGACGAGGCGUGGa -3'
miRNA:   3'- aCGGUa-GCaaCUgCUGCUUCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 203726 0.78 0.716303
Target:  5'- cGCCGUCcUUGACGACGcAGC-UGGCc -3'
miRNA:   3'- aCGGUAGcAACUGCUGCuUCGcAUCG- -5'
30183 5' -50.9 NC_006273.1 + 76536 0.74 0.867739
Target:  5'- cGCCGcUCGgcgcGGCGcACGAGGaCGUGGCg -3'
miRNA:   3'- aCGGU-AGCaa--CUGC-UGCUUC-GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 30770 0.74 0.874361
Target:  5'- cGCCggCGgcggUGGCGACGAuaacagcagcagcGGCgGUAGCa -3'
miRNA:   3'- aCGGuaGCa---ACUGCUGCU-------------UCG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 92798 0.74 0.882215
Target:  5'- aGgCAUCaaccccgUGGCGGCGAGGCGgugAGCa -3'
miRNA:   3'- aCgGUAGca-----ACUGCUGCUUCGCa--UCG- -5'
30183 5' -50.9 NC_006273.1 + 157172 0.74 0.8958
Target:  5'- gGUCAUCGUcguccaUGACGACGugucuauAGCGU-GCg -3'
miRNA:   3'- aCGGUAGCA------ACUGCUGCu------UCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 15754 0.74 0.8958
Target:  5'- aGCCA-CGUgGACGAUGAAGaaCGUGGUu -3'
miRNA:   3'- aCGGUaGCAaCUGCUGCUUC--GCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 72861 0.73 0.902249
Target:  5'- gGCCAUCGUgcgGACGGCcacGGUGU-GCa -3'
miRNA:   3'- aCGGUAGCAa--CUGCUGcu-UCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 210702 0.73 0.925684
Target:  5'- aGCUGUCGgaacgGACGACGGcAGCGcgGGUg -3'
miRNA:   3'- aCGGUAGCaa---CUGCUGCU-UCGCa-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.