miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30183 5' -50.9 NC_006273.1 + 51111 0.8 0.614622
Target:  5'- cGCCGggaaGggGACGACGAGGCGgugagGGCu -3'
miRNA:   3'- aCGGUag--CaaCUGCUGCUUCGCa----UCG- -5'
30183 5' -50.9 NC_006273.1 + 15422 0.71 0.964568
Target:  5'- cGCCG-CGUUGcccgaugaGCGACGcGAGCGcgAGCg -3'
miRNA:   3'- aCGGUaGCAAC--------UGCUGC-UUCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 95173 0.7 0.973518
Target:  5'- aGCaCGUCGUgu-CGACGuagaaaagacGGCGUGGCg -3'
miRNA:   3'- aCG-GUAGCAacuGCUGCu---------UCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 186603 0.66 0.999164
Target:  5'- cGCUGUgcacCGaUGACGugGAGGUGUucGCc -3'
miRNA:   3'- aCGGUA----GCaACUGCugCUUCGCAu-CG- -5'
30183 5' -50.9 NC_006273.1 + 64081 0.73 0.902249
Target:  5'- gGCCAUCagagcaGCGGCGggGCG-AGCa -3'
miRNA:   3'- aCGGUAGcaac--UGCUGCuuCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 202293 0.73 0.908463
Target:  5'- gGUCAUCGac--CGACGAGGCGcGGCg -3'
miRNA:   3'- aCGGUAGCaacuGCUGCUUCGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 92948 0.73 0.925684
Target:  5'- cGUCGUCGUgUGACGugGAGucggccuccaccGCcGUGGCg -3'
miRNA:   3'- aCGGUAGCA-ACUGCugCUU------------CG-CAUCG- -5'
30183 5' -50.9 NC_006273.1 + 1974 0.72 0.935968
Target:  5'- gGCCGgcgaCGggGACGACGucGCGccAGCg -3'
miRNA:   3'- aCGGUa---GCaaCUGCUGCuuCGCa-UCG- -5'
30183 5' -50.9 NC_006273.1 + 205185 0.72 0.945297
Target:  5'- gGCCG-CGgugagGACaagaaGACGGAGCGUGGUg -3'
miRNA:   3'- aCGGUaGCaa---CUG-----CUGCUUCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 193197 0.71 0.957537
Target:  5'- gGCCGUCGgcuauuACGACGAagaggaaaAGCGUcGCg -3'
miRNA:   3'- aCGGUAGCaac---UGCUGCU--------UCGCAuCG- -5'
30183 5' -50.9 NC_006273.1 + 82277 0.72 0.949608
Target:  5'- cGUCGUCGUacuugGGCGugGGccgcGGCGUGGa -3'
miRNA:   3'- aCGGUAGCAa----CUGCugCU----UCGCAUCg -5'
30183 5' -50.9 NC_006273.1 + 34386 0.72 0.940751
Target:  5'- cGCCAcCGUUGACGugGGcGGCGa--- -3'
miRNA:   3'- aCGGUaGCAACUGCugCU-UCGCaucg -5'
30183 5' -50.9 NC_006273.1 + 158313 0.77 0.726222
Target:  5'- gGCCAgcucgCGUUGGCGGCGcuuGCGgAGCa -3'
miRNA:   3'- aCGGUa----GCAACUGCUGCuu-CGCaUCG- -5'
30183 5' -50.9 NC_006273.1 + 34146 0.71 0.953687
Target:  5'- aGCCGgccCGUUGuguaugcaugucGCGACagaGAGGUGUAGCg -3'
miRNA:   3'- aCGGUa--GCAAC------------UGCUG---CUUCGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 189266 0.74 0.875086
Target:  5'- cGUCGUCGUUGGaGACGGAGgGUucuGCc -3'
miRNA:   3'- aCGGUAGCAACUgCUGCUUCgCAu--CG- -5'
30183 5' -50.9 NC_006273.1 + 7691 0.72 0.935968
Target:  5'- cGCCGUCGUUGuuGACGAuGCc--GCa -3'
miRNA:   3'- aCGGUAGCAACugCUGCUuCGcauCG- -5'
30183 5' -50.9 NC_006273.1 + 58663 0.71 0.957537
Target:  5'- cGCCGUUcUUGACGGCGu--UGUGGCu -3'
miRNA:   3'- aCGGUAGcAACUGCUGCuucGCAUCG- -5'
30183 5' -50.9 NC_006273.1 + 177112 0.71 0.967758
Target:  5'- gGCgGUgGgucccGACGACGAGGUGgcGCa -3'
miRNA:   3'- aCGgUAgCaa---CUGCUGCUUCGCauCG- -5'
30183 5' -50.9 NC_006273.1 + 102598 0.74 0.882215
Target:  5'- cGCCGUCGUUGACG-CGAAucauauaaauGCccGGCa -3'
miRNA:   3'- aCGGUAGCAACUGCuGCUU----------CGcaUCG- -5'
30183 5' -50.9 NC_006273.1 + 164456 0.73 0.920183
Target:  5'- gGCCGcUCGaUGACGAUGucGGCGcGGCg -3'
miRNA:   3'- aCGGU-AGCaACUGCUGCu-UCGCaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.