miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30184 3' -49.9 NC_006273.1 + 163719 0.66 0.99958
Target:  5'- -aUUGUGCAGCAGGcgcGCGGcGGUUUa- -3'
miRNA:   3'- ccAACAUGUCGUCUa--UGUC-CCAGAgc -5'
30184 3' -49.9 NC_006273.1 + 131891 0.66 0.99958
Target:  5'- -uUUGagGCGGCAca-GCGGGGUCUCu -3'
miRNA:   3'- ccAACa-UGUCGUcuaUGUCCCAGAGc -5'
30184 3' -49.9 NC_006273.1 + 230098 0.66 0.999478
Target:  5'- gGGUgGUG-AGCGGGUucccACAGGaGUCUCu -3'
miRNA:   3'- -CCAaCAUgUCGUCUA----UGUCC-CAGAGc -5'
30184 3' -49.9 NC_006273.1 + 47394 0.66 0.999212
Target:  5'- cGGUUGc-CGGCGGAggugcugGCGGGGUaacaUCa -3'
miRNA:   3'- -CCAACauGUCGUCUa------UGUCCCAg---AGc -5'
30184 3' -49.9 NC_006273.1 + 169980 0.67 0.998835
Target:  5'- -----cACGGCAGGUGCGGauGUCUCGc -3'
miRNA:   3'- ccaacaUGUCGUCUAUGUCc-CAGAGC- -5'
30184 3' -49.9 NC_006273.1 + 87700 0.67 0.998595
Target:  5'- cGGUgGUGCAGCGGcgGCugAGcGGUCauccUCGg -3'
miRNA:   3'- -CCAaCAUGUCGUCuaUG--UC-CCAG----AGC- -5'
30184 3' -49.9 NC_006273.1 + 126638 0.67 0.997989
Target:  5'- -----gGCAGaCGGAcggUGCGGGGUCUCc -3'
miRNA:   3'- ccaacaUGUC-GUCU---AUGUCCCAGAGc -5'
30184 3' -49.9 NC_006273.1 + 165351 0.68 0.997611
Target:  5'- uGUUGUACAGCAGGgcCAGaGUgUCc -3'
miRNA:   3'- cCAACAUGUCGUCUauGUCcCAgAGc -5'
30184 3' -49.9 NC_006273.1 + 105422 0.68 0.997529
Target:  5'- ---cGUGCAGCAGcagccccagggACGcGGGUCUCa -3'
miRNA:   3'- ccaaCAUGUCGUCua---------UGU-CCCAGAGc -5'
30184 3' -49.9 NC_006273.1 + 68586 0.68 0.995461
Target:  5'- cGGgUGUAUAcCAGAUgu-GGGUCUCGg -3'
miRNA:   3'- -CCaACAUGUcGUCUAuguCCCAGAGC- -5'
30184 3' -49.9 NC_006273.1 + 94913 0.69 0.993904
Target:  5'- ---aGUACAGCAGccacaACAGGGcCUCc -3'
miRNA:   3'- ccaaCAUGUCGUCua---UGUCCCaGAGc -5'
30184 3' -49.9 NC_006273.1 + 152580 0.69 0.991944
Target:  5'- aGGUUagccUGCAGCAGGUccugcgccaGCGGGuguGUCUCGg -3'
miRNA:   3'- -CCAAc---AUGUCGUCUA---------UGUCC---CAGAGC- -5'
30184 3' -49.9 NC_006273.1 + 22057 0.71 0.981777
Target:  5'- uGGUUGUGgAGCccaugacgacgggucGGAUACAGGGUg--- -3'
miRNA:   3'- -CCAACAUgUCG---------------UCUAUGUCCCAgagc -5'
30184 3' -49.9 NC_006273.1 + 51589 0.71 0.970963
Target:  5'- gGGUg--GCGGCGGcaGCGGGGUCUUc -3'
miRNA:   3'- -CCAacaUGUCGUCuaUGUCCCAGAGc -5'
30184 3' -49.9 NC_006273.1 + 80247 0.72 0.957696
Target:  5'- uGGUUGgacagGCAGgGGAUGuCGuGGGUCUCc -3'
miRNA:   3'- -CCAACa----UGUCgUCUAU-GU-CCCAGAGc -5'
30184 3' -49.9 NC_006273.1 + 61235 0.74 0.920025
Target:  5'- cGGcgGUGCAGCAGAUGCGGGcccagGUC-Ca -3'
miRNA:   3'- -CCaaCAUGUCGUCUAUGUCC-----CAGaGc -5'
30184 3' -49.9 NC_006273.1 + 29742 0.78 0.743646
Target:  5'- aGGUaGcGCAuGCAG-UGCAGGGUCUCGa -3'
miRNA:   3'- -CCAaCaUGU-CGUCuAUGUCCCAGAGC- -5'
30184 3' -49.9 NC_006273.1 + 177171 1.12 0.011712
Target:  5'- cGGUUGUACAGCAGAUACAGGGUCUCGu -3'
miRNA:   3'- -CCAACAUGUCGUCUAUGUCCCAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.