miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30184 5' -57.3 NC_006273.1 + 94392 0.66 0.943508
Target:  5'- -cCGGGcACCgGgcGcgGCCCGCUccGGAc -3'
miRNA:   3'- gaGCCC-UGGgCaaCuaUGGGCGA--CCU- -5'
30184 5' -57.3 NC_006273.1 + 205762 0.66 0.92957
Target:  5'- -aCGGGcaguucaugCCGUUGAcgUACCCGCcgGGAa -3'
miRNA:   3'- gaGCCCug-------GGCAACU--AUGGGCGa-CCU- -5'
30184 5' -57.3 NC_006273.1 + 47245 0.66 0.92957
Target:  5'- aCUCGGcGACCCG-----GCCCGCcGGc -3'
miRNA:   3'- -GAGCC-CUGGGCaacuaUGGGCGaCCu -5'
30184 5' -57.3 NC_006273.1 + 160340 0.66 0.924488
Target:  5'- -gUGGGGCCCGUgaggGggAgUCGUUGGGc -3'
miRNA:   3'- gaGCCCUGGGCAa---CuaUgGGCGACCU- -5'
30184 5' -57.3 NC_006273.1 + 190150 0.67 0.919187
Target:  5'- -cCGGGACgCCGUcGAUGaCCGUauUGGAc -3'
miRNA:   3'- gaGCCCUG-GGCAaCUAUgGGCG--ACCU- -5'
30184 5' -57.3 NC_006273.1 + 83346 0.67 0.912538
Target:  5'- -gUGGGACCCGgcggcgccguggUGGgaggACCCGCgGGc -3'
miRNA:   3'- gaGCCCUGGGCa-----------ACUa---UGGGCGaCCu -5'
30184 5' -57.3 NC_006273.1 + 174963 0.67 0.907931
Target:  5'- gCUCGaGGaggggccgcuGCCCGggGGUGacaaggaagcgUCCGCUGGAa -3'
miRNA:   3'- -GAGC-CC----------UGGGCaaCUAU-----------GGGCGACCU- -5'
30184 5' -57.3 NC_006273.1 + 226687 0.67 0.901979
Target:  5'- gUUGGGACggucgaCGUUGGcugcgUACCCGCUacgGGAa -3'
miRNA:   3'- gAGCCCUGg-----GCAACU-----AUGGGCGA---CCU- -5'
30184 5' -57.3 NC_006273.1 + 13908 0.67 0.901979
Target:  5'- gUCGGGcACCCGgcuGUGCCUGUcauccacuUGGAg -3'
miRNA:   3'- gAGCCC-UGGGCaacUAUGGGCG--------ACCU- -5'
30184 5' -57.3 NC_006273.1 + 162025 0.68 0.876069
Target:  5'- aCUCuGGGCCCGcUGGUGCUggcucuucUGCUGGu -3'
miRNA:   3'- -GAGcCCUGGGCaACUAUGG--------GCGACCu -5'
30184 5' -57.3 NC_006273.1 + 50225 0.68 0.854533
Target:  5'- -cUGGGugCUGUUGAgcUGCCCGCg--- -3'
miRNA:   3'- gaGCCCugGGCAACU--AUGGGCGaccu -5'
30184 5' -57.3 NC_006273.1 + 39427 0.68 0.854533
Target:  5'- -cCGGcGGCCCGcgGGguucUACCCGgUGGAc -3'
miRNA:   3'- gaGCC-CUGGGCaaCU----AUGGGCgACCU- -5'
30184 5' -57.3 NC_006273.1 + 234320 0.68 0.854533
Target:  5'- -cCGGcGGCCCGcgGGguucUACCCGgUGGAc -3'
miRNA:   3'- gaGCC-CUGGGCaaCU----AUGGGCgACCU- -5'
30184 5' -57.3 NC_006273.1 + 2302 0.72 0.648402
Target:  5'- uUCGGGuacuGCCCGcUGGacgggcacgugUACCCGCUGGc -3'
miRNA:   3'- gAGCCC----UGGGCaACU-----------AUGGGCGACCu -5'
30184 5' -57.3 NC_006273.1 + 197195 0.72 0.648402
Target:  5'- uUCGGGuacuGCCCGcUGGacgggcacgugUACCCGCUGGc -3'
miRNA:   3'- gAGCCC----UGGGCaACU-----------AUGGGCGACCu -5'
30184 5' -57.3 NC_006273.1 + 140870 0.73 0.619039
Target:  5'- uCUCGGGGCgCGa-GGUGCCCGcCUGGc -3'
miRNA:   3'- -GAGCCCUGgGCaaCUAUGGGC-GACCu -5'
30184 5' -57.3 NC_006273.1 + 177205 1.09 0.003699
Target:  5'- aCUCGGGACCCGUUGAUACCCGCUGGAa -3'
miRNA:   3'- -GAGCCCUGGGCAACUAUGGGCGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.