Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30184 | 5' | -57.3 | NC_006273.1 | + | 177205 | 1.09 | 0.003699 |
Target: 5'- aCUCGGGACCCGUUGAUACCCGCUGGAa -3' miRNA: 3'- -GAGCCCUGGGCAACUAUGGGCGACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 140870 | 0.73 | 0.619039 |
Target: 5'- uCUCGGGGCgCGa-GGUGCCCGcCUGGc -3' miRNA: 3'- -GAGCCCUGgGCaaCUAUGGGC-GACCu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 197195 | 0.72 | 0.648402 |
Target: 5'- uUCGGGuacuGCCCGcUGGacgggcacgugUACCCGCUGGc -3' miRNA: 3'- gAGCCC----UGGGCaACU-----------AUGGGCGACCu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 2302 | 0.72 | 0.648402 |
Target: 5'- uUCGGGuacuGCCCGcUGGacgggcacgugUACCCGCUGGc -3' miRNA: 3'- gAGCCC----UGGGCaACU-----------AUGGGCGACCu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 50225 | 0.68 | 0.854533 |
Target: 5'- -cUGGGugCUGUUGAgcUGCCCGCg--- -3' miRNA: 3'- gaGCCCugGGCAACU--AUGGGCGaccu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 39427 | 0.68 | 0.854533 |
Target: 5'- -cCGGcGGCCCGcgGGguucUACCCGgUGGAc -3' miRNA: 3'- gaGCC-CUGGGCaaCU----AUGGGCgACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 234320 | 0.68 | 0.854533 |
Target: 5'- -cCGGcGGCCCGcgGGguucUACCCGgUGGAc -3' miRNA: 3'- gaGCC-CUGGGCaaCU----AUGGGCgACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 162025 | 0.68 | 0.876069 |
Target: 5'- aCUCuGGGCCCGcUGGUGCUggcucuucUGCUGGu -3' miRNA: 3'- -GAGcCCUGGGCaACUAUGG--------GCGACCu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 13908 | 0.67 | 0.901979 |
Target: 5'- gUCGGGcACCCGgcuGUGCCUGUcauccacuUGGAg -3' miRNA: 3'- gAGCCC-UGGGCaacUAUGGGCG--------ACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 226687 | 0.67 | 0.901979 |
Target: 5'- gUUGGGACggucgaCGUUGGcugcgUACCCGCUacgGGAa -3' miRNA: 3'- gAGCCCUGg-----GCAACU-----AUGGGCGA---CCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 174963 | 0.67 | 0.907931 |
Target: 5'- gCUCGaGGaggggccgcuGCCCGggGGUGacaaggaagcgUCCGCUGGAa -3' miRNA: 3'- -GAGC-CC----------UGGGCaaCUAU-----------GGGCGACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 83346 | 0.67 | 0.912538 |
Target: 5'- -gUGGGACCCGgcggcgccguggUGGgaggACCCGCgGGc -3' miRNA: 3'- gaGCCCUGGGCa-----------ACUa---UGGGCGaCCu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 190150 | 0.67 | 0.919187 |
Target: 5'- -cCGGGACgCCGUcGAUGaCCGUauUGGAc -3' miRNA: 3'- gaGCCCUG-GGCAaCUAUgGGCG--ACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 160340 | 0.66 | 0.924488 |
Target: 5'- -gUGGGGCCCGUgaggGggAgUCGUUGGGc -3' miRNA: 3'- gaGCCCUGGGCAa---CuaUgGGCGACCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 47245 | 0.66 | 0.92957 |
Target: 5'- aCUCGGcGACCCG-----GCCCGCcGGc -3' miRNA: 3'- -GAGCC-CUGGGCaacuaUGGGCGaCCu -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 205762 | 0.66 | 0.92957 |
Target: 5'- -aCGGGcaguucaugCCGUUGAcgUACCCGCcgGGAa -3' miRNA: 3'- gaGCCCug-------GGCAACU--AUGGGCGa-CCU- -5' |
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30184 | 5' | -57.3 | NC_006273.1 | + | 94392 | 0.66 | 0.943508 |
Target: 5'- -cCGGGcACCgGgcGcgGCCCGCUccGGAc -3' miRNA: 3'- gaGCCC-UGGgCaaCuaUGGGCGA--CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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