miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 3' -50.5 NC_006273.1 + 202793 0.66 0.999039
Target:  5'- gCUGCUGcGUCACcg-UGUGACGcCGg- -3'
miRNA:   3'- -GACGAC-CAGUGuaaGCAUUGCaGCga -5'
30185 3' -50.5 NC_006273.1 + 124629 0.66 0.99902
Target:  5'- gUGCUGGUCGaugaccggaUCGgggauggugaaggUGGCGUCGCg -3'
miRNA:   3'- gACGACCAGUgua------AGC-------------AUUGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 157147 0.66 0.998835
Target:  5'- aUGUUGGUUGuCAUUCGUGGCcugaggucaucGUCGUc -3'
miRNA:   3'- gACGACCAGU-GUAAGCAUUG-----------CAGCGa -5'
30185 3' -50.5 NC_006273.1 + 192537 0.67 0.997953
Target:  5'- -cGCUGGUCACAgccaUCGgccaGACGgaacccaUCGCc -3'
miRNA:   3'- gaCGACCAGUGUa---AGCa---UUGC-------AGCGa -5'
30185 3' -50.5 NC_006273.1 + 189204 0.67 0.997611
Target:  5'- aUGCUGGUCGgCGUUcccggCGUGgauACGUCGg- -3'
miRNA:   3'- gACGACCAGU-GUAA-----GCAU---UGCAGCga -5'
30185 3' -50.5 NC_006273.1 + 198169 0.67 0.997611
Target:  5'- uCUGcCUGGgCACGcgcgUCGgccGCGUCGCa -3'
miRNA:   3'- -GAC-GACCaGUGUa---AGCau-UGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 192777 0.67 0.997176
Target:  5'- aUGuCUGGcgCGCAUUCaggAGCGUUGCa -3'
miRNA:   3'- gAC-GACCa-GUGUAAGca-UUGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 159963 0.67 0.996046
Target:  5'- gUGUUGGUCGCAUUgGUGaguacgguggauuGCGUgcCGCc -3'
miRNA:   3'- gACGACCAGUGUAAgCAU-------------UGCA--GCGa -5'
30185 3' -50.5 NC_006273.1 + 58685 0.68 0.995461
Target:  5'- gCUGCUauugGGUCACAgccgCGUGccGCGggugCGCg -3'
miRNA:   3'- -GACGA----CCAGUGUaa--GCAU--UGCa---GCGa -5'
30185 3' -50.5 NC_006273.1 + 148393 0.68 0.995461
Target:  5'- uCUGCgucUGGUCACGccugucgguUUCGUGGcCGUgGCa -3'
miRNA:   3'- -GACG---ACCAGUGU---------AAGCAUU-GCAgCGa -5'
30185 3' -50.5 NC_006273.1 + 103113 0.68 0.991944
Target:  5'- gUGCUGGcCACGU-CGU--CGUCGUg -3'
miRNA:   3'- gACGACCaGUGUAaGCAuuGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 15670 0.69 0.989515
Target:  5'- aCUGcCUGGUgacgaCGCGUUCGUcGACG-CGCg -3'
miRNA:   3'- -GAC-GACCA-----GUGUAAGCA-UUGCaGCGa -5'
30185 3' -50.5 NC_006273.1 + 30379 0.69 0.989515
Target:  5'- -cGCgGcGUCGCAgcUCGUcACGUCGCUc -3'
miRNA:   3'- gaCGaC-CAGUGUa-AGCAuUGCAGCGA- -5'
30185 3' -50.5 NC_006273.1 + 121014 0.69 0.986548
Target:  5'- -cGCUGGUC-CAgacgUCGU--CGUCGCc -3'
miRNA:   3'- gaCGACCAGuGUa---AGCAuuGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 56561 0.69 0.984843
Target:  5'- cCUGgccCUGGUCGCGUUCGg---GUUGCUg -3'
miRNA:   3'- -GAC---GACCAGUGUAAGCauugCAGCGA- -5'
30185 3' -50.5 NC_006273.1 + 187219 0.71 0.970963
Target:  5'- -gGCUGcGUCGCcUUCgGUGACGUCGgUg -3'
miRNA:   3'- gaCGAC-CAGUGuAAG-CAUUGCAGCgA- -5'
30185 3' -50.5 NC_006273.1 + 7286 0.73 0.92558
Target:  5'- aUGCUGGUUACGaauacCGUAcuugGCGUCGCc -3'
miRNA:   3'- gACGACCAGUGUaa---GCAU----UGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 93245 0.75 0.859354
Target:  5'- -cGCUGGUCACGU-CGc--CGUCGCg -3'
miRNA:   3'- gaCGACCAGUGUAaGCauuGCAGCGa -5'
30185 3' -50.5 NC_006273.1 + 178781 1.09 0.015058
Target:  5'- gCUGCUGGUCACAUUCGUAACGUCGCUg -3'
miRNA:   3'- -GACGACCAGUGUAAGCAUUGCAGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.