Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30185 | 3' | -50.5 | NC_006273.1 | + | 7286 | 0.73 | 0.92558 |
Target: 5'- aUGCUGGUUACGaauacCGUAcuugGCGUCGCc -3' miRNA: 3'- gACGACCAGUGUaa---GCAU----UGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 15670 | 0.69 | 0.989515 |
Target: 5'- aCUGcCUGGUgacgaCGCGUUCGUcGACG-CGCg -3' miRNA: 3'- -GAC-GACCA-----GUGUAAGCA-UUGCaGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 30379 | 0.69 | 0.989515 |
Target: 5'- -cGCgGcGUCGCAgcUCGUcACGUCGCUc -3' miRNA: 3'- gaCGaC-CAGUGUa-AGCAuUGCAGCGA- -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 56561 | 0.69 | 0.984843 |
Target: 5'- cCUGgccCUGGUCGCGUUCGg---GUUGCUg -3' miRNA: 3'- -GAC---GACCAGUGUAAGCauugCAGCGA- -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 58685 | 0.68 | 0.995461 |
Target: 5'- gCUGCUauugGGUCACAgccgCGUGccGCGggugCGCg -3' miRNA: 3'- -GACGA----CCAGUGUaa--GCAU--UGCa---GCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 93245 | 0.75 | 0.859354 |
Target: 5'- -cGCUGGUCACGU-CGc--CGUCGCg -3' miRNA: 3'- gaCGACCAGUGUAaGCauuGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 103113 | 0.68 | 0.991944 |
Target: 5'- gUGCUGGcCACGU-CGU--CGUCGUg -3' miRNA: 3'- gACGACCaGUGUAaGCAuuGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 121014 | 0.69 | 0.986548 |
Target: 5'- -cGCUGGUC-CAgacgUCGU--CGUCGCc -3' miRNA: 3'- gaCGACCAGuGUa---AGCAuuGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 124629 | 0.66 | 0.99902 |
Target: 5'- gUGCUGGUCGaugaccggaUCGgggauggugaaggUGGCGUCGCg -3' miRNA: 3'- gACGACCAGUgua------AGC-------------AUUGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 148393 | 0.68 | 0.995461 |
Target: 5'- uCUGCgucUGGUCACGccugucgguUUCGUGGcCGUgGCa -3' miRNA: 3'- -GACG---ACCAGUGU---------AAGCAUU-GCAgCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 157147 | 0.66 | 0.998835 |
Target: 5'- aUGUUGGUUGuCAUUCGUGGCcugaggucaucGUCGUc -3' miRNA: 3'- gACGACCAGU-GUAAGCAUUG-----------CAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 159963 | 0.67 | 0.996046 |
Target: 5'- gUGUUGGUCGCAUUgGUGaguacgguggauuGCGUgcCGCc -3' miRNA: 3'- gACGACCAGUGUAAgCAU-------------UGCA--GCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 178781 | 1.09 | 0.015058 |
Target: 5'- gCUGCUGGUCACAUUCGUAACGUCGCUg -3' miRNA: 3'- -GACGACCAGUGUAAGCAUUGCAGCGA- -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 187219 | 0.71 | 0.970963 |
Target: 5'- -gGCUGcGUCGCcUUCgGUGACGUCGgUg -3' miRNA: 3'- gaCGAC-CAGUGuAAG-CAUUGCAGCgA- -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 189204 | 0.67 | 0.997611 |
Target: 5'- aUGCUGGUCGgCGUUcccggCGUGgauACGUCGg- -3' miRNA: 3'- gACGACCAGU-GUAA-----GCAU---UGCAGCga -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 192537 | 0.67 | 0.997953 |
Target: 5'- -cGCUGGUCACAgccaUCGgccaGACGgaacccaUCGCc -3' miRNA: 3'- gaCGACCAGUGUa---AGCa---UUGC-------AGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 192777 | 0.67 | 0.997176 |
Target: 5'- aUGuCUGGcgCGCAUUCaggAGCGUUGCa -3' miRNA: 3'- gAC-GACCa-GUGUAAGca-UUGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 198169 | 0.67 | 0.997611 |
Target: 5'- uCUGcCUGGgCACGcgcgUCGgccGCGUCGCa -3' miRNA: 3'- -GAC-GACCaGUGUa---AGCau-UGCAGCGa -5' |
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30185 | 3' | -50.5 | NC_006273.1 | + | 202793 | 0.66 | 0.999039 |
Target: 5'- gCUGCUGcGUCACcg-UGUGACGcCGg- -3' miRNA: 3'- -GACGAC-CAGUGuaaGCAUUGCaGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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