miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 71789 0.66 0.980772
Target:  5'- aGAGUuacuGGCAGCCgcggCGGugGCGACaaCGGGg -3'
miRNA:   3'- cUUCG----UCGUUGG----GCUugCGCUG--GUCC- -5'
30185 5' -54.7 NC_006273.1 + 144404 0.66 0.980772
Target:  5'- -cAGCGGCugucuGCCCGGcgcCGCGGCgGcGGa -3'
miRNA:   3'- cuUCGUCGu----UGGGCUu--GCGCUGgU-CC- -5'
30185 5' -54.7 NC_006273.1 + 234847 0.66 0.980772
Target:  5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3'
miRNA:   3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 29770 0.66 0.980772
Target:  5'- -cGGCGcGCAGCCCGAcGCGCGcaaacuccAUgAGGu -3'
miRNA:   3'- cuUCGU-CGUUGGGCU-UGCGC--------UGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 203907 0.66 0.980772
Target:  5'- ---aCAGCAGCCCaGGC-CGACgAGGa -3'
miRNA:   3'- cuucGUCGUUGGGcUUGcGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 16 0.66 0.980772
Target:  5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3'
miRNA:   3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 194909 0.66 0.980772
Target:  5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3'
miRNA:   3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 79680 0.66 0.980772
Target:  5'- aGAGGCuGGCAAagUCGAACaCGGCCAcGGg -3'
miRNA:   3'- -CUUCG-UCGUUg-GGCUUGcGCUGGU-CC- -5'
30185 5' -54.7 NC_006273.1 + 97212 0.66 0.97862
Target:  5'- aAAGCuGCAACCCGccugccCGCaGGCCGuGGc -3'
miRNA:   3'- cUUCGuCGUUGGGCuu----GCG-CUGGU-CC- -5'
30185 5' -54.7 NC_006273.1 + 51259 0.66 0.97862
Target:  5'- --cGC-GCAGCCCGugGACGCGACa--- -3'
miRNA:   3'- cuuCGuCGUUGGGC--UUGCGCUGgucc -5'
30185 5' -54.7 NC_006273.1 + 101207 0.66 0.97862
Target:  5'- aGggGCAcCGAggCGGACGCGGCCAc- -3'
miRNA:   3'- -CuuCGUcGUUggGCUUGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 48366 0.66 0.97862
Target:  5'- cAGGCGGCu-CCCGggUGUGGaguucaaCGGGu -3'
miRNA:   3'- cUUCGUCGuuGGGCuuGCGCUg------GUCC- -5'
30185 5' -54.7 NC_006273.1 + 152343 0.66 0.97862
Target:  5'- -uGGCGGCAgaGCCCGucguAGCGCagaaucuccucGugCAGGu -3'
miRNA:   3'- cuUCGUCGU--UGGGC----UUGCG-----------CugGUCC- -5'
30185 5' -54.7 NC_006273.1 + 193327 0.66 0.97862
Target:  5'- -cAGCAGCAAccgccgccCCCGAcACGUaaACCGGGc -3'
miRNA:   3'- cuUCGUCGUU--------GGGCU-UGCGc-UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 193233 0.66 0.97862
Target:  5'- cGAGCGGCAGaaaCgGGugGaCGACgAGGu -3'
miRNA:   3'- cUUCGUCGUUg--GgCUugC-GCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 15614 0.66 0.97862
Target:  5'- gGAAGCAGC----CGAGCGCGAggccgcuggucaUCAGGa -3'
miRNA:   3'- -CUUCGUCGuuggGCUUGCGCU------------GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 133727 0.66 0.97862
Target:  5'- ---uCAGCGGCCaGAACGUGACCu-- -3'
miRNA:   3'- cuucGUCGUUGGgCUUGCGCUGGucc -5'
30185 5' -54.7 NC_006273.1 + 38792 0.66 0.978395
Target:  5'- cGAGCAGUAcaacacgGCCuCGAACGUGACgGa- -3'
miRNA:   3'- cUUCGUCGU-------UGG-GCUUGCGCUGgUcc -5'
30185 5' -54.7 NC_006273.1 + 206567 0.66 0.976294
Target:  5'- aAAGcCAGUGugCCG--UGCGGCUAGGg -3'
miRNA:   3'- cUUC-GUCGUugGGCuuGCGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 133498 0.66 0.976294
Target:  5'- -uGGCGGCGGCCCGGGCuuuguuagcCGACUAc- -3'
miRNA:   3'- cuUCGUCGUUGGGCUUGc--------GCUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.