Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30185 | 5' | -54.7 | NC_006273.1 | + | 206567 | 0.66 | 0.976294 |
Target: 5'- aAAGcCAGUGugCCG--UGCGGCUAGGg -3' miRNA: 3'- cUUC-GUCGUugGGCuuGCGCUGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 38792 | 0.66 | 0.978395 |
Target: 5'- cGAGCAGUAcaacacgGCCuCGAACGUGACgGa- -3' miRNA: 3'- cUUCGUCGU-------UGG-GCUUGCGCUGgUcc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 152343 | 0.66 | 0.97862 |
Target: 5'- -uGGCGGCAgaGCCCGucguAGCGCagaaucuccucGugCAGGu -3' miRNA: 3'- cuUCGUCGU--UGGGC----UUGCG-----------CugGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 45865 | 0.66 | 0.975562 |
Target: 5'- --uGuCGGCGGCCCugGAACucucacacagcgcgGCGGCCGGGc -3' miRNA: 3'- cuuC-GUCGUUGGG--CUUG--------------CGCUGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 129513 | 0.66 | 0.976294 |
Target: 5'- aAAGCAGCGcgACCCGGAgaaUGGCCGGc -3' miRNA: 3'- cUUCGUCGU--UGGGCUUgc-GCUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 222838 | 0.66 | 0.973527 |
Target: 5'- aGAGCAGCAa--CGGACGCGucaucucGCCuGGa -3' miRNA: 3'- cUUCGUCGUuggGCUUGCGC-------UGGuCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 40238 | 0.66 | 0.974813 |
Target: 5'- -cGGCAG-AACCCGGuUGCGGCCccguaccgcucuucuGGGg -3' miRNA: 3'- cuUCGUCgUUGGGCUuGCGCUGG---------------UCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 213135 | 0.66 | 0.973788 |
Target: 5'- uGGAGCGGCA---CGAugGUGACCGucGGc -3' miRNA: 3'- -CUUCGUCGUuggGCUugCGCUGGU--CC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 30023 | 0.66 | 0.976294 |
Target: 5'- --uGCAGCAcuagguuccaGCCCG---GCGGCCAGa -3' miRNA: 3'- cuuCGUCGU----------UGGGCuugCGCUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 151840 | 0.66 | 0.971096 |
Target: 5'- uGAGCAggucgcGCAGCUCGcgcACGCGAuucucCCAGGu -3' miRNA: 3'- cUUCGU------CGUUGGGCu--UGCGCU-----GGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 234847 | 0.66 | 0.980772 |
Target: 5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3' miRNA: 3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 154641 | 0.66 | 0.971096 |
Target: 5'- -cGGCGGCAACgaCGAGacgGCGuuuuuCCAGGa -3' miRNA: 3'- cuUCGUCGUUGg-GCUUg--CGCu----GGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 209432 | 0.66 | 0.971096 |
Target: 5'- -cAGCGGCGuCUCGuAGCGUacaGCCAGGg -3' miRNA: 3'- cuUCGUCGUuGGGC-UUGCGc--UGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 103517 | 0.66 | 0.971096 |
Target: 5'- -cAGguGCGugCCGucGAUGCGGCCGc- -3' miRNA: 3'- cuUCguCGUugGGC--UUGCGCUGGUcc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 233463 | 0.66 | 0.973788 |
Target: 5'- cGGGCAGCAccgcGCCC-AGCGCcaGCCAGc -3' miRNA: 3'- cUUCGUCGU----UGGGcUUGCGc-UGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 234114 | 0.66 | 0.971096 |
Target: 5'- -cGGCAGCAgcguGCCCGcgucgcGCuGCGACCAc- -3' miRNA: 3'- cuUCGUCGU----UGGGCu-----UG-CGCUGGUcc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 88122 | 0.66 | 0.976294 |
Target: 5'- --cGCGGCaAACuuGuccaucagcGACGCGGCCAGc -3' miRNA: 3'- cuuCGUCG-UUGggC---------UUGCGCUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 94104 | 0.66 | 0.971096 |
Target: 5'- uGGGCGGCcgcACCUaggGAGCGCGagccccguGCCGGGc -3' miRNA: 3'- cUUCGUCGu--UGGG---CUUGCGC--------UGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 133498 | 0.66 | 0.976294 |
Target: 5'- -uGGCGGCGGCCCGGGCuuuguuagcCGACUAc- -3' miRNA: 3'- cuUCGUCGUUGGGCUUGc--------GCUGGUcc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 113258 | 0.66 | 0.976294 |
Target: 5'- aGGAGCuGguGCaaGAGCGUcugucgGGCCAGGu -3' miRNA: 3'- -CUUCGuCguUGggCUUGCG------CUGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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