miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 178818 1.11 0.004612
Target:  5'- uGAAGCAGCAACCCGAACGCGACCAGGg -3'
miRNA:   3'- -CUUCGUCGUUGGGCUUGCGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 152009 0.82 0.309283
Target:  5'- -cGGCAGCAGCCCG-ACGUGGCCcgcGGGu -3'
miRNA:   3'- cuUCGUCGUUGGGCuUGCGCUGG---UCC- -5'
30185 5' -54.7 NC_006273.1 + 129440 0.79 0.409703
Target:  5'- uAGGCAGgAGCUCGAGCGCcGACCAGu -3'
miRNA:   3'- cUUCGUCgUUGGGCUUGCG-CUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 139300 0.79 0.435596
Target:  5'- cAGGCGGCGACCgCGGACucgccuCGGCCAGGg -3'
miRNA:   3'- cUUCGUCGUUGG-GCUUGc-----GCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 175172 0.78 0.475214
Target:  5'- uGAGUAGCGgucugagcaccuuuaAUCCGGccgGCGCGACCAGGa -3'
miRNA:   3'- cUUCGUCGU---------------UGGGCU---UGCGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 68786 0.76 0.544567
Target:  5'- gGAAGCGGUcuggcagcgacuggAACCCGGACGCGuaGCCGGcGg -3'
miRNA:   3'- -CUUCGUCG--------------UUGGGCUUGCGC--UGGUC-C- -5'
30185 5' -54.7 NC_006273.1 + 191994 0.76 0.586944
Target:  5'- aGGAGCAGCccugguGGCCCGAcaACGCcAUCAGGa -3'
miRNA:   3'- -CUUCGUCG------UUGGGCU--UGCGcUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 145598 0.75 0.626891
Target:  5'- uGAGCGGgGGCCCGAGCGaCGGuCUGGGc -3'
miRNA:   3'- cUUCGUCgUUGGGCUUGC-GCU-GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 197256 0.75 0.626891
Target:  5'- -cGGCcucGcCGGCCCGAGCGCG-CCGGGg -3'
miRNA:   3'- cuUCGu--C-GUUGGGCUUGCGCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 48578 0.75 0.626891
Target:  5'- aGggGCGGCAugCCGuugGCGgCG-CCGGGa -3'
miRNA:   3'- -CuuCGUCGUugGGCu--UGC-GCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 3676 0.75 0.646915
Target:  5'- -cAGCGGCAugCCG-ACGCcGACCcGGGg -3'
miRNA:   3'- cuUCGUCGUugGGCuUGCG-CUGG-UCC- -5'
30185 5' -54.7 NC_006273.1 + 216924 0.74 0.686765
Target:  5'- --cGguGCGACCCGGcguGCGgaUGACCAGGu -3'
miRNA:   3'- cuuCguCGUUGGGCU---UGC--GCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 91801 0.74 0.69664
Target:  5'- aGAAGCGGCGAaaggCCGuACGCGACacgAGGa -3'
miRNA:   3'- -CUUCGUCGUUg---GGCuUGCGCUGg--UCC- -5'
30185 5' -54.7 NC_006273.1 + 164442 0.73 0.716226
Target:  5'- uGAGCAGCAGCacgCCGcguCGCGcCCAGGc -3'
miRNA:   3'- cUUCGUCGUUG---GGCuu-GCGCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 131673 0.73 0.716226
Target:  5'- --cGCGGC-GCCCGAagcgcaguguacGCGCGaACCGGGu -3'
miRNA:   3'- cuuCGUCGuUGGGCU------------UGCGC-UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 124052 0.73 0.716226
Target:  5'- -cAGCGGCGcgGCCgCGcuAUGCGGCCAGGc -3'
miRNA:   3'- cuUCGUCGU--UGG-GCu-UGCGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 129476 0.73 0.72592
Target:  5'- -cGGCGGCGGCgUGAGCGCGAggcgucggagcUCGGGg -3'
miRNA:   3'- cuUCGUCGUUGgGCUUGCGCU-----------GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 204182 0.73 0.72592
Target:  5'- -cAGCGGCAaccagggcaGCCUGGACGCcGGCCGGc -3'
miRNA:   3'- cuUCGUCGU---------UGGGCUUGCG-CUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 147512 0.73 0.72592
Target:  5'- -uAGCGGCGGCCCGcucgcucggGAgGCGAUgGGGg -3'
miRNA:   3'- cuUCGUCGUUGGGC---------UUgCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 81731 0.73 0.72592
Target:  5'- -uGGCGGCcgcuuGCCCGAgcccuGCGCGgaGCCGGGc -3'
miRNA:   3'- cuUCGUCGu----UGGGCU-----UGCGC--UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.